Review article2015Peer reviewedOpen access
Experiences with workflows for automating data-intensive bioinformatics
Spjuth, Ola; Bongcam-Rudloff, Erik; Vassilev, Dimitar.
Swedish University of Agricultural Sciences
Department of Animal Breeding and Genetics (HGEN)
Faculty of Veterinary Medicine and Animal Sciences
Publications
2015
Conference abstract2015
Identification of the locus responsible for polydactyly in miniature Shetland Ponies using whole-genome re-sequencing
Velie, Brandon; Jäderkvist, Kim; Wattle, Ove et al.
Conference abstract2015
Sequencing and Annotation of the Equine Major Histocompatibility Complex
Viluma, Agnese; Mikko, Sofia; Andersson, Göran et al.
Conference abstract2015
Stopping the itch: A genome-wide association study of insect bite hypersensitivity in Exmoor ponies
Velie, Brandon; Shrestha, Merina; Blott, Sarah et al.
Conference abstract2015
Genetic analysis of conformation traits in Icelandic horses
Shrestha, Merina; Eriksson, Susanne; Schurink, A. et al.
Conference abstract2015
Horsegene Database: An efficient and secure way to store and share phenotypes and genotypes between researchers
Velie, Brandon; Shrestha, Merina; Stinckens, Anneleen et al.
Licentiate thesis2015Open access
Everyday behaviour in dogs : breed differences and genetic analysis
Eken Asp, Helena.
Research article2015Peer reviewedOpen access
The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence
Norling, Martin; Bongcam-Rudloff, Erik; Silva, Joana C..
Other publication2015
Canine infectious tracheobronchitis in Swedish dogs – what does a metagenomics approach reveal?
Malmberg, Maja; Hayer, Juliette; Karlsson, Oskar Erik et al.
Other publication2015
Kobuvirus in brains of piglets diagnosed with congenital tremor type A-II
Malmberg, Maja; Segalés, Joaquim; Hayer, Juliette et al.
Research article2015Peer reviewedOpen access
Predicting heterosis for egg production traits in crossbred offspring of individual White Leghorn sires using genome-wide SNP data
Amuzu-Aweh, E. Nancy; Bovenhuis, Henk; De Koning, Dirk-Jan et al.
Book chapter2015
Status and potential of genomics on performance traits in the sporthorse
Mikko, Sofia.
Research article2015Peer reviewedOpen access
Evaluation of Whole-Genome Sequencing of Four Chinese Crested Dogs for Variant Detection Using the Ion Proton System
Viluma, Agnese; Sayyab, Shumaila; Mikko, Sofia et al.
Research article2015Peer reviewedOpen access
Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics
Mushtaq, Mamoona; Zubair, Saima; Råsbäck, Therese et al.
Research article2015Peer reviewedOpen access
Characterization of genetic diversity and gene mapping in two Swedish local chicken breeds
Johansson, Anna M.; Nelson, Ronald M..
Conference paper2015
Phenotype measurements of Bali cattle combined with interviews of farmers from multiple locations in Indonesia as a resourse for development of breeding programs
Eriksson, Ann; Margawati, Endang Tri; Indriawati, Indriawati et al.
Conference abstract2015
Investigating the genetic status of Bali cattle in Indonesia using large scale genotyping
Svensson, Emma; Eriksson, Ann; Clemensson Lindell, Ida et al.
Research article2015Peer reviewed
Seasonal variation in sperm quality parameters in Swedish red dairy bulls used for artificial insemination
Valeanu, Sabina; Johannisson, Anders; Lundeheim, Nils et al.
Other publication2015
Dairy breeding programs focusing on animal welfare and environment – a simulation study
Wallenbeck, Anna; Keba, Mirkena Tadele; Ahlman, Therese et al.
Other publication2015
Welfare, environmental impact and production – conflicting pig breeding goals
Rydhmer, Lotta; Keba, Mirkena Tadele; Ahlman, Therese et al.
Conference poster2015
Genetic parameters for dry matter intake in primiparous Holstein, Nordic Red and Jersey
Li, Bingjie; Fikse, Freddy; Lassen, J. et al.
Review article2015Peer reviewedOpen access
Genomic selection needs to be carefully assessed to meet specific requirements in livestock breeding programs
Jonas, Elisabeth; de Koning, Dirk-Jan.
Other publication2015
Association studies for growth index in three dairy cattle breeds using whole-genome sequence data
Mao, Xiaowei; Sahana, Goutam; De Koning, Dirk-Jan et al.
Other publication2015
Accuracy of genomic breeding values of purebreds for crossbred performance in pigs
Hidalgo, André; Bastiaansen, J.W.M.; Lopes, Marcos S. et al.
Other publication2015
Fine-mapping of a QTL region on BTA18 affecting non-coagulating milk in Swedish Red cows
Duchemin, Sandrine; Glantz, Maria; De Koning, Dirk-Jan et al.
Conference abstract2015
Using loci with identified dominance effects to improve the prediction of heterosis
Amuzu-Aweh, E. Nancy; Bijma, Piter; Bovenhuis, Henk et al.
Conference poster2015
REML and Bayesian analysis of association between leg conformation in young pigs and sow longevity
Hong, Thu Le; Madsen, P; Lundeheim, Nils et al.
Research article2015Peer reviewedOpen access
Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene
Saenko, Suzanne; Lamichhaney, Sangeet; Martinez Barrio, Alvaro et al.
Conference abstract2015Peer reviewed
Impact of insulin on mitochondrial function and anti-oxidative stress response in bovine Day 8 blastocysts
Laskowski, Denise; Sjunnesson, Ylva; Andersson, Göran et al.
Report2015Open access
Kött och mjölk från djur uppfödda på bete och restprodukter - ger det en hållbar kost? : resultat från projektet Hållbar svensk proteinkonsumtion
Röös, Elin; Patel, Mikaela; Spångberg, Johanna et al.
Other publication2015
Travhäst som ridhäst - påverkar genotypen i DMRT3 hästens ridegenskaper?
Jäderkvist, Kim; Lindgren, Gabriella.
Other publication2015
SynchrogGait Learn about your horse´s natural ability for different gaits
Andersson, Lisa; Jäderkvist, Kim.
Other publication2015
Season affects expression and heritability of in-line recorded estrus traits in Danish Holstein
Ismael, Ahmed; Strandberg, Erling; Berglund, Britt et al.
Other publication2015
Unravelling the genetic background for endocrine fertility traits in dairy cows
Tenghe, A. M. M.; Bouwman, A. C.; Berglund, Britt et al.
Research article2015Peer reviewedOpen access
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
Andersson, Leif; Archibald, Alan L; Bottema, Cynthia D. et al.
Magazine article2015
Söker hästar med silverfärg till en klinisk studie
Jäderkvist, Kim; Andersson, Lisa; Johansson, Maria et al.
Other publication2015
The importance of the DMRT3 mutation on riding traits and gaits in Standardbred and Nordic trotters
Jäderkvist, Kim; Andersson, Lisa; Lindgren, Gabriella.
Conference abstract2015Peer reviewed
Horses: an underutilized animal model
Velie, Brandon; Jäderkvist, Kim; Shrestha, Merina et al.
Other publication2015
Stochastic simulation of alternative future blue fox breeding strategies
Peura, Jussi; Sörensen, A.C.; Meier, Kristian et al.
Conference abstract2015Peer reviewed
Herd factors affecting longevity in Swedish dairy cattle
Strandberg, Erling; Roth, Anki; Emanuelson, Ulf.
Conference poster2015Peer reviewed
Gene flows and dog breeding practices in France, Sweden and UK
Wang, Shizhi; Leroy, G.; Lewis, S. et al.
Conference abstract2015
Genetic analysis of patellar luxation in dogs
Nilsson, Katja; Zanders, Sofie; Malm, Sofia.
Other publication2015
Breeding objectives and practices of sport horse studbooks: results of a worldwide inventory
Stock, Kathrin Friederike; Quinn Brady, K.; Christiansen, Karina et al.
Review article2015Peer reviewed
Influence of genetically modified organisms on agro-ecosystem processes
Kolseth, Anna-Karin; D'Hertefeldt, Tina; Emmerich, Maren et al.
Research article2015Peer reviewed
The importance of the DMRT3 ‘Gait keeper’ mutation on riding traits and gaits in Standardbred and Icelandic horses
Jäderkvist, Kim; Holm, Niina; Imsland, Freyja et al.
Conference abstract2015
Whole genome resequencing of ten breed-specific DNA pools and 34 individual horses – Selective sweep screens and comprehensive analyses of genetic variation
Sällman Almen, Markus; Imsland, Freyja; Mikko, Sofia et al.
Research article2015Peer reviewed
Individual identification of pigs during rearing and at slaughter using microchips
Bergqvist, Ann-Sofi; Forsberg, Frida; Eliasson, Christina et al.
Research article2015Peer reviewed
Genetic association between leg conformation in young pigs and sow reproduction
Hong, Thu Le; Nilsson, Katja; Norberg, Elise et al.
Research article2015Peer reviewed
Prevalence and genetic parameters for cryptorchidism in Swedish-born Icelandic horses
Eriksson S, Jaderkvist K, Dalin AM, Axelsson J, Lindgren G.
Conference abstract2015
Spatio-temporal patterns of reindeer (Rangifer tarandus tarandus) and brown bears (Ursus arctos) behavior during reindeer calving season
Sivertsen, Therese; Steyaert, Sam M.J.G.; Rönnegård, Lars et al.
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