Research article2022Peer reviewed
Optimization of Culture Conditions for Zinc Phosphate Solubilization by Aspergillus sp. Using Response Surface Methodology
Barin, Mohsen; Asadzadeh, Farrokh; Hashemnejad, Fatemeh et al.
Sandeep Kumar Kushwaha
Faculty of Landscape Architecture, Horticulture and Crop Production Science
ORCID: 0000-0002-1998-1430
Publications
2022
Research article2022Peer reviewedOpen access
Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea
Piombo, Edoardo; Vetukuri, Ramesh Raju; Sundararajan, Poorva et al.
2021
Research article2021Peer reviewedOpen access
Harnessing the Potential of Symbiotic Endophytic Fungi and Plant Growth-Promoting Rhizobacteria to Enhance Soil Quality in Saline Soils
Rouydel, Zahra; Barin, Mohsen; Rasouli-Sadaghiani, Mir Hassan et al.
Research article2021Peer reviewedOpen access
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions
Piombo, Edoardo; Vetukuri, Ramesh R.; Broberg, Anders et al.
Other publication in scientific journal2021Peer reviewedOpen access
ResCap: plant resistance gene prediction and probe generation pipeline for resistance gene sequence capture
Kushwaha, Sandeep K.; Ahman, Inger; Bengtsson, Therese et al.
Research article2021Peer reviewedOpen access
Haustorium formation and a distinct biotrophic transcriptome characterize infection of Nicotiana benthamiana by the tree pathogen Phytophthora kernoviae
Wang, Shumei; Vetukuri, Ramesh R.; Kushwaha, Sandeep K. et al.
2020
Research article2020Peer reviewedOpen access
Differential Gene Expression Analysis of Wheat Breeding Lines Reveal Molecular Insights in Yellow Rust Resistance under Field Conditions
Kumar Kushwaha, Sandeep; Vetukuri, Ramesh R.; Odilbekov, Firuz et al.
Research article2020Peer reviewedOpen access
Affordable phenotyping of winter wheat under field and controlled conditions for drought tolerance
Kumar, Dhananjay; Kushwaha, Sandeep Kumar; Kushwaha, Sandeep et al.
Research article2020Peer reviewedOpen access
Linking crop traits to transcriptome differences in a progeny population of tetraploid potato
Alexandersson, Erik; Kushwaha, Sandeep; Subedi, Aastha et al.
2019
Review article2019Peer reviewed
Recent Advances and Computational Approaches in Peptide Drug Discovery
Maurya, Neha S.; Kushwaha, Sandeep; Mani, Ashutosh.
Research article2019Peer reviewedOpen access
Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes
Desta, Zeratsion Abera; Kolano, Bozena; Shamim, Zeeshan et al.
Research article2019Peer reviewedOpen access
Charting oat (Avena sativa) embryo and endosperm transcription factor expression reveals differential expression of potential importance for seed development
Kushwaha, Sandeep Kumar; Grimberg, Asa; Carlsson, Anders S. et al.
Conference abstract2019
The role of viral and oomycete suppressors of silencing in modulating plant defense
Vetukuri, R. R.; Kalyandurg, P. B.; Sen, D. et al.
Conference abstract2019
New insights into pathogenicity of the emerging tropical pathogen: Phytophthora colocasiae on taro
Sen, D.; Kushwaha, S.; Lamour, K. H. et al.
Research article2019Peer reviewedOpen access
Efficient RNA silencing suppression activity of Potato Mop-Top Virus 8K protein is driven by variability and positive selection
Kalyandurg, Pruthvi B.; Tahmasebi, Aminallah; Vetukuri, Ramesh R. et al.
Book chapter2019Peer reviewed
Bioinformatics resources for microbial research in biological systems
Yadev, B.S.; Chauhan, P.; Kushwaha, S..
2018
Research article2018Peer reviewedOpen access
Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora
Vetukuri, Ramesh R.; Tripathy, Sucheta; Malar, Mathu C. et al.
Research article2018Peer reviewedOpen access
Genome Sequence Resource for the Oomycete Taro Pathogen Phytophthora colocasiae
Vetukuri, Ramesh R.; Kushwaha, Sandeep K.; Sen, Diya et al.
2017
Research article2017Peer reviewedOpen access
Draft Genome of Biocontrol Agent Pythium periplocum Strain CBS 532.74
Kushwaha, Sandeep Kumar; Vetukuri, Ramesh; Grenville-Briggs Didymus, Laura.
Research article2017Peer reviewedOpen access
Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74
Kushwaha, Sandeep Kumar; Vetukuri, Ramesh; Grenville-Briggs Didymus, Laura.
Research article2017Peer reviewed
Agricultural land use determines functional genetic diversity of soil microbial communities
Manoharan, Lokeshwaran; Kushwaha, Sandeep K.; Ahren, Dag et al.
Research article2017Peer reviewedOpen access
Draft Genome of the Oomycete pathogen Phytophthora cactorum Strain LV007 isolated from European Beech (Fagus sylvatica)
Grenville-Briggs Didymus, Laura; Kushwaha, Sandeep Kumar; Cleary, Michelle et al.
Review article2017Peer reviewedOpen access
Food Waste to Energy: An Overview of Sustainable Approaches for Food Waste Management and Nutrient Recycling
Paritosh, Kunwar; Kumar Kushwaha, Sandeep; Yadav, Monika et al.
2016
Research article2016Peer reviewedOpen access
NBSPred: a support vector machine-based high throughput pipeline for plant resistance protein NBSLRR prediction
Kushwaha, Sandeep K.; Chauhan, Pallavi; Hedlund, Katarina et al.
Research article2016Peer reviewedOpen access
Potato tuber expression of Arabidopsis WRINKLED1 increase triacylglycerol and membrane lipids while affecting central carbohydrate metabolism
Hofvander, Per; Ischebeck, Till; Turesson, Helle et al.
Research article2016Peer reviewedOpen access
Data set for diet specific differential gene expression analysis in three Spodoptera moths
Roy, Amit; Walker, William B.; Vogel, H. et al.
2015
Research article2015Peer reviewedOpen access
MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics
Kushwaha, Sandeep K.; Manoharan, Lokeshwaran; Meerupati, Tejashwari et al.
Research article2015Peer reviewedOpen access
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils
Manoharan, Lokeshwaran; Kumar Kushwaha, Sandeep; Hedlund, Katarina et al.
2010
Conference paper2010Peer reviewed
Identification of Melanoma (Skin Cancer) Proteins through Support Vector Machine
Rathore, Babita; Kushwaha, Sandeep K.; Shakya, Madhvi et al.
Research article2010Peer reviewed
Protein interaction network analysis—approach for potential drug target identification in Mycobacterium tuberculosis
Kushwaha, Sandeep K.; Shakya, Madhvi.
2009
Conference paper2009Peer reviewed
Neural Network: A Machine Learning Technique for Tertiary Structure Prediction of Proteins from Peptide Sequences
Kumar Kushwaha, Sandeep; Shakya, Madhvi.
Conference paper2009Peer reviewed
Multi-layer perceptron architecture for tertiary structure prediction of helical content of proteins from peptide sequences
Kumar Kushwaha, Sandeep; Shakya, Madhvi.
Research article2009Peer reviewed
Molecular modelling and dynamics studies of Mycobacterium tuberculosis protein RelA (Rv2583c)
Kumar Kushwaha, Sandeep; Shakya, Madhvi.
Research article2009Peer reviewed
Development of Efficient Drug Analogs for Dutasteride through Insilico Modeling
Kumar Kushwaha, Sandeep.
Research article2009Peer reviewed
PINAT1.0: protein interaction network analysis tool
Kumar Kushwaha, Sandeep; Shakya, Madhvi.
Research article2009Peer reviewed
Rational drug designing for drug target alanine racemase (Alr) of mycobacterium tuberculosis
Kumar Kushwaha, Sandeep; Chauhan, Pallavi.
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