Piombo, Edoardo; Kelbessa, Bekele Gelena; Sundararajan, Poorva et. al 2023 RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents Research article (Peer reviewed) DOI:10.3389/fmicb.2023.1076522
Kalin, Carol; Brantestam, Agnese Kolodinska; Arvidsson, Anna-Kerstin et. al 2023 Evaluation of pea genotype PI180693 partial resistance towards aphanomyces root rot in commercial pea breeding Research article (Peer reviewed) DOI:10.3389/fpls.2023.1114408
Piombo, Edoardo; Guaschino, Micol; Jensen, Dan Funck et. al 2023 Insights into the ecological generalist lifestyle of Clonostachys fungi through analysis of their predicted secretomes Research article (Peer reviewed) DOI:10.3389/fmicb.2023.1112673
Kelbessa, Bekele Gelena; Dubey, Mukesh; Catara, Vittoria et. al 2023 Potential of plant growth-promoting rhizobacteria to improve crop productivity and adaptation to a changing climate Review article (Peer reviewed) DOI:10.1079/cabireviews.2023.0001
Jensen, Birgit; Jørgensen, Hans J.L.; Collinge, David B. et. al 2022 Microbial biocontrol agents in IPM strategies - reducing pesticide use in wheat and lowering the risk of fungicide resistance Report (Peer reviewed)
Piombo, Edoardo; Dubey, Mukesh 2022 Computational analysis of HTS data and its application in plant pathology. Book chapter (Peer reviewed) DOI:10.1007/978-1-0716-2517-0_17
Kalin, Carol; Berlin, Anna; Brantestam, Agnese Kolodinska et. al 2022 Genetic diversity of the pea root pathogen Aphanomyces euteiches in Europe Research article (Peer reviewed) DOI:10.1111/ppa.13598
Piombo, Edoardo; Vetukuri, Ramesh Raju; Sundararajan, Poorva et. al 2022 Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea Research article (Peer reviewed) DOI:10.1128/aem.00643-22
Gomez-Munoz, Beatriz; Efthymiou, Aikaterini; Dubey, Mukesh et. al 2022 Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil Research article (Peer reviewed) DOI:10.1016/j.funbio.2022.03.003
Rafiei, Vahideh; Ruffino, Alessandra; Persson Hoden, Kristian et. al 2022 A Verticillium longisporum pleiotropic drug transporter determines tolerance to the plant host beta-pinene monoterpene Research article (Peer reviewed) DOI:10.1111/mpp.13162
Kalyandurg, Pruthvi B.; Sundararajan, Poorva; Dubey, Mukesh et. al 2021 Spray-Induced Gene Silencing as a Potential Tool to Control Potato Late Blight Disease Research article (Peer reviewed) DOI:10.1094/PHYTO-02-21-0054-SC
Jensen, Dan Funck; Dubey, Mukesh; Jensen, Birgit et. al 2021 Clonostachys rosea to control plant diseases Book chapter (Peer reviewed)
Piombo, Edoardo; Vetukuri, Ramesh R.; Broberg, Anders et. al 2021 Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions Research article (Peer reviewed) DOI:10.1128/Spectrum.01099-21
Dubey, Mukesh 2021 Biological Control of Plant Diseases in Changing Environment Editorial (Peer reviewed) DOI:10.3390/agronomy11102000
Stenberg, Johan A.; Sundh, Ingvar; Becher, Paul G. et. al 2021 When is it biological control? A framework of definitions, mechanisms, and classifications Review article (Peer reviewed) DOI:10.1007/s10340-021-01354-7
Ramesh, Vetukuri; Dubey, Mukesh; Kalyandurg, Pruthvi Balachandra et. al 2021 Spray-induced gene silencing: an innovative strategy for plant trait improvement and disease control Review article (Peer reviewed) DOI:10.1590/1984-70332021v21Sa24
Ben Amira, Maroua; Faize, Mohamed; Karlsson, Magnus et. al 2021 Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional Considerations Research article (Peer reviewed) DOI:10.3390/biom11020338
Broberg, Martin; Dubey, Mukesh; Iqbal, Mudassir et. al 2021 Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales) Research article (Peer reviewed) DOI:10.1111/eva.13134
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus 2021 Functional characterization of the AGL1 aegerolysin in the mycoparasitic fungusTrichoderma atroviridereveals a role in conidiation and antagonism Research article (Peer reviewed) DOI:10.1007/s00438-020-01732-3
Chaudhary, Rajiv; Lunden, Karl; Dalman, Kerstin et. al 2020 Combining transcriptomics and genetic linkage based information to identify candidate genes associated with Heterobasidion-resistance in Norway spruce Research article (Peer reviewed) DOI:10.1038/s41598-020-69386-0
Iqbal, Mudassir; Broberg, Martin; Haarith, Deepak et. al 2020 Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome-wide association mapping Research article (Peer reviewed) DOI:10.1111/eva.13001
Iqbal, Mudassir; Broberg, Martin; Dubey, Mukesh et. al 2020 Genome-wide association identifies genomic regions in fungus Clonostachys rosea that influence antagonism and biocontrol of plant-parasitic nematodes Conference abstract
Dubey, Mukesh; Velez, Heriberto; Broberg, Martin et. al 2020 LysM Proteins Regulate Fungal Development and Contribute to Hyphal Protection and Biocontrol Traits in Clonostachys rosea Research article (Peer reviewed) DOI:10.3389/fmicb.2020.00679
Iqbal, Mudassir; Dubey, Mukesh; Broberg, Martin et. al 2019 Identification of genomic regions involved in production of nematicidal compounds in the biocontrol fungus Clonostachys rosea through genome-wide association mapping. Conference abstract
Broberg, Martin; Dubey, Mukesh; Iqbal, Mudassir et. al 2019 Genome-wide association mapping identifies membrane efflux transporters as a key component in fungicide tolerance in the biocontrol fungus Clonostachys rosea Conference abstract
Iqbal, Mudassir; Dubey, Mukesh; Broberg, Anders et. al 2019 Deletion of the Nonribosomal Peptide Synthetase Gene nps1 in the Fungus Clonostachys rosea Attenuates Antagonism and Biocontrol of Plant Pathogenic Fusarium and Nematodes Research article (Peer reviewed) DOI:10.1094/PHYTO-02-19-0042-R
Broberg, Martin; Dubey, Mukesh; Sun, Man-Hong et. al 2018 Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping Research article (Peer reviewed) DOI:10.3389/fmicb.2018.02844
Iqbal, Mudassir; Dubey, Mukesh; Gudmundsson, Mikael et. al 2018 Comparative evolutionary histories of fungal proteases reveal gene gains in the mycoparasitic and nematode-parasitic fungus Clonostachys rosea Research article (Peer reviewed) DOI:10.1186/s12862-018-1291-1
Atanasova, Lea; Dubey, Mukesh; Grujic, Marica et. al 2018 Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family Research article (Peer reviewed) DOI:10.1186/s12866-018-1310-9
Fatema, Umma; Broberg, Anders; Jensen, Dan Funck et. al 2018 Functional analysis of polyketide synthase genes in the biocontrol fungus Clonostachys rosea Research article (Peer reviewed) DOI:10.1038/s41598-018-33391-1
Fatema, U.; Broberg, A.; Jensen, D. F. et. al 2018 Functional characterization of polyketide synthase genes in the biocontrol fungus Clonostachys rosea Other publication
Nygren, K.; Dubey, M.; Zapparata, A. et. al 2018 Transcriptome and genome analyses of the biocontrol fungus Clonostachys rosea highlights toxin tolerance as a key biocontrol trait Conference abstract (Peer reviewed)
Iqbal, M.; Dubey, M.; Viketoft, M. et. al 2018 Biological control of plant-parasitic nematodes in carrot and wheat by the fungus Clonostachys rosea Other publication
Schmidt, Ruth; Durling, Mikael B.; de Jager, Victor et. al 2018 Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum Research article (Peer reviewed) DOI:10.1093/femsec/fiy078
Nygren, Kristiina; Dubey, Mukesh; Zapparata, Antonio et. al 2018 The mycoparasitic fungus Clonostachys rosea responds with both common and specific gene expression during interspecific interactions with fungal prey Research article (Peer reviewed) DOI:10.1111/eva.12609
Iqbal, Mudassir; Dubey, Mukesh; McEwan, Kerstin et. al 2018 Evaluation of Clonostachys rosea for Control of Plant- Parasitic Nematodes in Soil and in Roots of Carrot and Wheat Research article (Peer reviewed) DOI:10.1094/PHYTO-03-17-0091-R
Iqbal, Mudassir; Viketoft, Maria; Dubey, Mukesh et. al 2016 Effect of application of nematode parasitizing fungus Clonostachys rosea on nematode communities and plant health Conference abstract
Tzelepis, Georgios; Dubey, Mukesh; Jensen, Dan Funck et. al 2016 Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys rosea Conference abstract
Nygren, Kristiina; Dubey, Mukesh; Brandström Durling, Mikael et. al 2016 Genome and transcriptome analyses of the mycoparasite Clonostachys rosea highlights mycotoxin tolerance as a key biocontrol trait Conference paper
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus 2016 Role of a pleiotropic drug transporter protein in xenobiotic tolerance and antagonism in fungal biocontrol agent Clonostachys rosea Conference paper
Kamou, Nathalie N.; Dubey, Mukesh; Tzelepis, Georgios et. al 2016 Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7 Research article (Peer reviewed) DOI:10.1007/s00203-016-1198-4
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus 2016 The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea Research article (Peer reviewed) DOI:10.1007/s00438-015-1139-y
Tzelepis, Georgios; Dubey, Mukesh; Jensen, Dan Funck et. al 2015 Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys roseae Research article (Peer reviewed) DOI:10.1099/mic.0.000096
Dubey, Mukesh; Dhawan, O. P. 2015 Relationship of downy mildew resistance with yield related traits helpful for achieving reliable selection criteria in opium poppy (Papaver somniferum L.) Research article (Peer reviewed) DOI:10.5958/0975-6906.2015.00064.4
Karlsson, Magnus; Brandström Durling, Mikael; Tzelepis, Georgios et. al 2015 Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea Research article (Peer reviewed) DOI:10.1093/gbe/evu292
Dubey, M. K.; Singh, S. K.; Dhawan, O. P. Mathe, A (Ed./Editors) 2014 Relationship of downy mildew resistance with marker and yield related traits helpful for achieving reliable selection criteria in Opium Poppy (Papaver somniferum L.) Conference paper (Peer reviewed) DOI:10.17660/ActaHortic.2014.1036.6
Tzelepis G, Hosomi A, Hossain TJ, Hirayama H, Dubey M, Jensen DF, Suzuki T, Karlsson M 2014 Endo-beta-N-acetylglucosamidases (ENGases) in the fungus Trichoderma atroviride: Possible involvement of the filamentous fungi-specific cytosolic ENGase in the ERAD process Research article (Peer reviewed) DOI:10.1016/j.bbrc.2014.05.017
Dubey MK, Jensen DF, Karlsson M 2014 An ATP-Binding Cassette Pleiotropic Drug Transporter Protein Is Required for Xenobiotic Tolerance and Antagonism in the Fungal Biocontrol Agent Clonostachys rosea Research article (Peer reviewed) DOI:10.1094/MPMI-12-13-0365-R
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus 2014 Hydrophobins are required for conidial hydrophobicity and plant root colonization in the fungal biocontrol agent Clonostachys rosea Research article (Peer reviewed) DOI:10.1186/1471-2180-14-18
Dubey, Mukesh; Ubhayasekera, Wimal; Sandgren, Mats et. al 2013 The Trichoderma atroviride Eng18B ENGase gene product is essential for in vitro antagonism against Botrytis cinerea Conference paper