Research article2024Peer reviewedOpen access
Small RNAs: A new paradigm in fungal-fungal interactions used for biocontrol
Piombo, Edoardo; Vetukuri, Ramesh R.; Tzelepis, Georgios et al.
Publications
2024
Research article2024Peer reviewedOpen access
Transcriptomic analysis identifies candidate genes for Aphanomyces root rot disease resistance in pea
Kalin, Carol; Piombo, Edoardo; Bourras, Salim et al.
Research article2024Peer reviewedOpen access
Transcriptomic and functional analyses on a Botrytis cinerea multidrug-resistant (MDR) strain provides new insights into the potential molecular mechanisms of MDR and fitness
Sofianos, Georgios; Piombo, Edoardo; Dubey, Mukesh et al.
2023
Research article2023Peer reviewedOpen access
RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents
Piombo, Edoardo; Kelbessa, Bekele Gelena; Sundararajan, Poorva et al.
Research article2023Peer reviewedOpen access
Verticilium longisporum phospholipase VlsPLA(2) is a virulence factor that targets host nuclei and modulates plant immunity
Rafiei, Vahideh; Velez, Heriberto; Piombo, Edoardo et al.
Research article2023Peer reviewedOpen access
Insights into the ecological generalist lifestyle of Clonostachys fungi through analysis of their predicted secretomes
Piombo, Edoardo; Guaschino, Micol; Jensen, Dan Funck et al.
Research article2023Peer reviewedOpen access
Evaluation of pea genotype PI180693 partial resistance towards aphanomyces root rot in commercial pea breeding
Kalin, Carol; Brantestam, Agnese Kolodinska; Arvidsson, Anna-Kerstin et al.
Review article2023Peer reviewedOpen access
Potential of plant growth-promoting rhizobacteria to improve crop productivity and adaptation to a changing climate
Kelbessa, Bekele Gelena; Dubey, Mukesh; Catara, Vittoria et al.
2022
Research article2022Peer reviewedOpen access
A Verticillium longisporum pleiotropic drug transporter determines tolerance to the plant host beta-pinene monoterpene
Rafiei, Vahideh; Ruffino, Alessandra; Persson Hoden, Kristian et al.
Research article2022Peer reviewed
Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil
Gomez-Munoz, Beatriz; Efthymiou, Aikaterini; Dubey, Mukesh et al.
Research article2022Peer reviewedOpen access
Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea
Piombo, Edoardo; Vetukuri, Ramesh Raju; Sundararajan, Poorva et al.
Report2022Peer reviewed
Microbial biocontrol agents in IPM strategies - reducing pesticide use in wheat and lowering the risk of fungicide resistance
Jensen, Birgit; Jørgensen, Hans J.L.; Collinge, David B. et al.
Book chapter2022Peer reviewed
Computational analysis of HTS data and its application in plant pathology.
Piombo, Edoardo; Dubey, Mukesh.
Research article2022Peer reviewedOpen access
Genetic diversity of the pea root pathogen Aphanomyces euteiches in Europe
Kalin, Carol; Berlin, Anna; Brantestam, Agnese Kolodinska et al.
2021
Research article2021Peer reviewedOpen access
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales)
Broberg, Martin; Dubey, Mukesh; Iqbal, Mudassir et al.
Research article2021Peer reviewedOpen access
Spray-Induced Gene Silencing as a Potential Tool to Control Potato Late Blight Disease
Kalyandurg, Pruthvi B.; Sundararajan, Poorva; Dubey, Mukesh et al.
Editorial2021Peer reviewedOpen access
Biological Control of Plant Diseases in Changing Environment
Dubey, Mukesh.
Research article2021Peer reviewedOpen access
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions
Piombo, Edoardo; Vetukuri, Ramesh R.; Broberg, Anders et al.
Book chapter2021Peer reviewed
Clonostachys rosea to control plant diseases
Jensen, Dan Funck; Dubey, Mukesh; Jensen, Birgit et al.
Review article2021Peer reviewedOpen access
When is it biological control? A framework of definitions, mechanisms, and classifications
Stenberg, Johan A.; Sundh, Ingvar; Becher, Paul G. et al.
Review article2021Peer reviewedOpen access
Spray-induced gene silencing: an innovative strategy for plant trait improvement and disease control
Ramesh, Vetukuri; Dubey, Mukesh; Kalyandurg, Pruthvi Balachandra et al.
Research article2021Peer reviewedOpen access
Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional Considerations
Ben Amira, Maroua; Faize, Mohamed; Karlsson, Magnus et al.
Research article2021Peer reviewedOpen access
Functional characterization of the AGL1 aegerolysin in the mycoparasitic fungusTrichoderma atroviridereveals a role in conidiation and antagonism
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus.
2020
Research article2020Peer reviewedOpen access
Combining transcriptomics and genetic linkage based information to identify candidate genes associated with Heterobasidion-resistance in Norway spruce
Chaudhary, Rajiv; Lunden, Karl; Dalman, Kerstin et al.
Research article2020Peer reviewedOpen access
Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome-wide association mapping
Iqbal, Mudassir; Broberg, Martin; Haarith, Deepak et al.
Conference abstract2020Open access
Genome-wide association identifies genomic regions in fungus Clonostachys rosea that influence antagonism and biocontrol of plant-parasitic nematodes
Iqbal, Mudassir; Broberg, Martin; Dubey, Mukesh et al.
Research article2020Peer reviewedOpen access
LysM Proteins Regulate Fungal Development and Contribute to Hyphal Protection and Biocontrol Traits in Clonostachys rosea
Dubey, Mukesh; Velez, Heriberto; Broberg, Martin et al.
2019
Conference abstract2019
Identification of genomic regions involved in production of nematicidal compounds in the biocontrol fungus Clonostachys rosea through genome-wide association mapping.
Iqbal, Mudassir; Dubey, Mukesh; Broberg, Martin et al.
Conference abstract2019
Genome-wide association mapping identifies membrane efflux transporters as a key component in fungicide tolerance in the biocontrol fungus Clonostachys rosea
Broberg, Martin; Dubey, Mukesh; Iqbal, Mudassir et al.
Research article2019Peer reviewedOpen access
Deletion of the Nonribosomal Peptide Synthetase Gene nps1 in the Fungus Clonostachys rosea Attenuates Antagonism and Biocontrol of Plant Pathogenic Fusarium and Nematodes
Iqbal, Mudassir; Dubey, Mukesh; Broberg, Anders et al.
2018
Other publication2018
Biological control of plant-parasitic nematodes in carrot and wheat by the fungus Clonostachys rosea
Iqbal, M.; Dubey, M.; Viketoft, M. et al.
Research article2018Peer reviewedOpen access
Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping
Broberg, Martin; Dubey, Mukesh; Sun, Man-Hong et al.
Research article2018Peer reviewedOpen access
Comparative evolutionary histories of fungal proteases reveal gene gains in the mycoparasitic and nematode-parasitic fungus Clonostachys rosea
Iqbal, Mudassir; Dubey, Mukesh; Gudmundsson, Mikael et al.
Research article2018Peer reviewedOpen access
Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family
Atanasova, Lea; Dubey, Mukesh; Grujic, Marica et al.
Research article2018Peer reviewedOpen access
Functional analysis of polyketide synthase genes in the biocontrol fungus Clonostachys rosea
Fatema, Umma; Broberg, Anders; Jensen, Dan Funck et al.
Other publication2018
Functional characterization of polyketide synthase genes in the biocontrol fungus Clonostachys rosea
Fatema, U.; Broberg, A.; Jensen, D. F. et al.
Conference abstract2018Peer reviewed
Transcriptome and genome analyses of the biocontrol fungus Clonostachys rosea highlights toxin tolerance as a key biocontrol trait
Nygren, K.; Dubey, M.; Zapparata, A. et al.
Research article2018Peer reviewedOpen access
Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum
Schmidt, Ruth; Durling, Mikael B.; de Jager, Victor et al.
Research article2018Peer reviewedOpen access
The mycoparasitic fungus Clonostachys rosea responds with both common and specific gene expression during interspecific interactions with fungal prey
Nygren, Kristiina; Dubey, Mukesh; Zapparata, Antonio et al.
Research article2018Peer reviewedOpen access
Evaluation of Clonostachys rosea for Control of Plant- Parasitic Nematodes in Soil and in Roots of Carrot and Wheat
Iqbal, Mudassir; Dubey, Mukesh; McEwan, Kerstin et al.
2016
Research article2016Peer reviewed
The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus.
Conference abstract2016
Effect of application of nematode parasitizing fungus Clonostachys rosea on nematode communities and plant health
Iqbal, Mudassir; Viketoft, Maria; Dubey, Mukesh et al.
Conference abstract2016
Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys rosea
Tzelepis, Georgios; Dubey, Mukesh; Jensen, Dan Funck et al.
Conference paper2016
Genome and transcriptome analyses of the mycoparasite Clonostachys rosea highlights mycotoxin tolerance as a key biocontrol trait
Nygren, Kristiina; Dubey, Mukesh; Brandström Durling, Mikael et al.
Conference paper2016
Role of a pleiotropic drug transporter protein in xenobiotic tolerance and antagonism in fungal biocontrol agent Clonostachys rosea
Dubey, Mukesh; Jensen, Dan Funck; Karlsson, Magnus.
Research article2016Peer reviewed
Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7
Kamou, Nathalie N.; Dubey, Mukesh; Tzelepis, Georgios et al.
2015
Research article2015Peer reviewedOpen access
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
Karlsson, Magnus; Brandström Durling, Mikael; Tzelepis, Georgios et al.
Research article2015Peer reviewedOpen access
Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys roseae
Tzelepis, Georgios; Dubey, Mukesh; Jensen, Dan Funck et al.
Research article2015Peer reviewed
Relationship of downy mildew resistance with yield related traits helpful for achieving reliable selection criteria in opium poppy (Papaver somniferum L.)
Dubey, Mukesh; Dhawan, O. P..
2014
Research article2014Peer reviewedOpen access
An ATP-Binding Cassette Pleiotropic Drug Transporter Protein Is Required for Xenobiotic Tolerance and Antagonism in the Fungal Biocontrol Agent Clonostachys rosea
Dubey MK, Jensen DF, Karlsson M.