RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents
Research article (Peer reviewed)
Mukesh Dubey
Department of Forest Mycology and Plant Pathology
Faculty of Natural Resources and Agricultural Sciences
Email: Mukesh.Dubey@slu.se
ORCID: 0000-0001-7393-366X
Publications
2023
Evaluation of pea genotype PI180693 partial resistance towards aphanomyces root rot in commercial pea breeding
Research article (Peer reviewed)
Insights into the ecological generalist lifestyle of Clonostachys fungi through analysis of their predicted secretomes
Research article (Peer reviewed)
Potential of plant growth-promoting rhizobacteria to improve crop productivity and adaptation to a changing climate
Review article (Peer reviewed)
Verticilium longisporum phospholipase VlsPLA(2) is a virulence factor that targets host nuclei and modulates plant immunity
Research article (Peer reviewed)
2022
Microbial biocontrol agents in IPM strategies - reducing pesticide use in wheat and lowering the risk of fungicide resistance
Report (Peer reviewed)
Computational analysis of HTS data and its application in plant pathology.
Book chapter (Peer reviewed)
Genetic diversity of the pea root pathogen Aphanomyces euteiches in Europe
Research article (Peer reviewed)
Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea
Research article (Peer reviewed)
Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil
Research article (Peer reviewed)
A Verticillium longisporum pleiotropic drug transporter determines tolerance to the plant host beta-pinene monoterpene
Research article (Peer reviewed)
2021
Biological Control of Plant Diseases in Changing Environment
Editorial (Peer reviewed)
Spray-Induced Gene Silencing as a Potential Tool to Control Potato Late Blight Disease
Research article (Peer reviewed)
Clonostachys rosea to control plant diseases
Book chapter (Peer reviewed)
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions
Research article (Peer reviewed)
When is it biological control? A framework of definitions, mechanisms, and classifications
Review article (Peer reviewed)
Spray-induced gene silencing: an innovative strategy for plant trait improvement and disease control
Review article (Peer reviewed)
Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional Considerations
Research article (Peer reviewed)
Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in Clonostachys subgenus Bionectria (Fungi, Ascomycota, Hypocreales)
Research article (Peer reviewed)
Functional characterization of the AGL1 aegerolysin in the mycoparasitic fungusTrichoderma atroviridereveals a role in conidiation and antagonism
Research article (Peer reviewed)
2020
Combining transcriptomics and genetic linkage based information to identify candidate genes associated with Heterobasidion-resistance in Norway spruce
Research article (Peer reviewed)
Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome-wide association mapping
Research article (Peer reviewed)
Genome-wide association identifies genomic regions in fungus Clonostachys rosea that influence antagonism and biocontrol of plant-parasitic nematodes
Conference abstract
LysM Proteins Regulate Fungal Development and Contribute to Hyphal Protection and Biocontrol Traits in Clonostachys rosea
Research article (Peer reviewed)
2019
Identification of genomic regions involved in production of nematicidal compounds in the biocontrol fungus Clonostachys rosea through genome-wide association mapping.
Conference abstract
Genome-wide association mapping identifies membrane efflux transporters as a key component in fungicide tolerance in the biocontrol fungus Clonostachys rosea
Conference abstract
Deletion of the Nonribosomal Peptide Synthetase Gene nps1 in the Fungus Clonostachys rosea Attenuates Antagonism and Biocontrol of Plant Pathogenic Fusarium and Nematodes
Research article (Peer reviewed)
2018
Biological control of plant-parasitic nematodes in carrot and wheat by the fungus Clonostachys rosea
Other publication
Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping
Research article (Peer reviewed)
Comparative evolutionary histories of fungal proteases reveal gene gains in the mycoparasitic and nematode-parasitic fungus Clonostachys rosea
Research article (Peer reviewed)
Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family
Research article (Peer reviewed)
Functional analysis of polyketide synthase genes in the biocontrol fungus Clonostachys rosea
Research article (Peer reviewed)
Functional characterization of polyketide synthase genes in the biocontrol fungus Clonostachys rosea
Other publication
Transcriptome and genome analyses of the biocontrol fungus Clonostachys rosea highlights toxin tolerance as a key biocontrol trait
Conference abstract (Peer reviewed)
Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum
Research article (Peer reviewed)
The mycoparasitic fungus Clonostachys rosea responds with both common and specific gene expression during interspecific interactions with fungal prey
Research article (Peer reviewed)
Evaluation of Clonostachys rosea for Control of Plant- Parasitic Nematodes in Soil and in Roots of Carrot and Wheat
Research article (Peer reviewed)
2016
Effect of application of nematode parasitizing fungus Clonostachys rosea on nematode communities and plant health
Conference abstract
Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys rosea
Conference abstract
Genome and transcriptome analyses of the mycoparasite Clonostachys rosea highlights mycotoxin tolerance as a key biocontrol trait
Conference paper
Role of a pleiotropic drug transporter protein in xenobiotic tolerance and antagonism in fungal biocontrol agent Clonostachys rosea
Conference paper
Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7
Research article (Peer reviewed)
The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea
Research article (Peer reviewed)
2015
Identifying glycoside hydrolase family 18 genes in the mycoparasitic fungal species Clonostachys roseae
Research article (Peer reviewed)
Relationship of downy mildew resistance with yield related traits helpful for achieving reliable selection criteria in opium poppy (Papaver somniferum L.)
Research article (Peer reviewed)
Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea
Research article (Peer reviewed)
2014
Relationship of downy mildew resistance with marker and yield related traits helpful for achieving reliable selection criteria in Opium Poppy (Papaver somniferum L.)
Conference paper (Peer reviewed)
Endo-beta-N-acetylglucosamidases (ENGases) in the fungus Trichoderma atroviride: Possible involvement of the filamentous fungi-specific cytosolic ENGase in the ERAD process
Research article (Peer reviewed)
An ATP-Binding Cassette Pleiotropic Drug Transporter Protein Is Required for Xenobiotic Tolerance and Antagonism in the Fungal Biocontrol Agent Clonostachys rosea
Research article (Peer reviewed)
Hydrophobins are required for conidial hydrophobicity and plant root colonization in the fungal biocontrol agent Clonostachys rosea
Research article (Peer reviewed)
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