Piombo, Edoardo; Vetukuri, Ramesh Raju; Sundararajan, Poorva et. al 2022 Comparative Small RNA and Degradome Sequencing Provides Insights into Antagonistic Interactions in the Biocontrol Fungus Clonostachys rosea Research article (Peer reviewed) DOI:10.1128/aem.00643-22
Barin, Mohsen; Asadzadeh, Farrokh; Hashemnejad, Fatemeh et. al 2022 Optimization of Culture Conditions for Zinc Phosphate Solubilization by Aspergillus sp. Using Response Surface Methodology Research article (Peer reviewed) DOI:10.1007/s42729-021-00709-4
Kushwaha, Sandeep Kumar; Kumar Kushwaha, Sandeep; Åhman, Inger et. al 2021 ResCap: plant resistance gene prediction and probe generation pipeline for resistance gene sequence capture Other publication in scientific journal (Peer reviewed) DOI:10.1093/bioadv/vbab033
Piombo, Edoardo; Vetukuri, Ramesh R.; Broberg, Anders et. al 2021 Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions Research article (Peer reviewed) DOI:10.1128/Spectrum.01099-21
Rouydel, Zahra; Barin, Mohsen; Rasouli-Sadaghiani, Mir Hassan et. al 2021 Harnessing the Potential of Symbiotic Endophytic Fungi and Plant Growth-Promoting Rhizobacteria to Enhance Soil Quality in Saline Soils Research article (Peer reviewed) DOI:10.3390/pr9101810
Wang, Shumei; Vetukuri, Ramesh R.; Kushwaha, Sandeep K. et. al 2021 Haustorium formation and a distinct biotrophic transcriptome characterize infection of Nicotiana benthamiana by the tree pathogen Phytophthora kernoviae Research article (Peer reviewed) DOI:10.1111/mpp.13072
Alexandersson, Erik; Kushwaha, Sandeep; Subedi, Aastha et. al 2020 Linking crop traits to transcriptome differences in a progeny population of tetraploid potato Research article (Peer reviewed) DOI:10.1186/s12870-020-2305-x
Kumar Kushwaha, Sandeep; Vetukuri, Ramesh R.; Odilbekov, Firuz et. al 2020 Differential Gene Expression Analysis of Wheat Breeding Lines Reveal Molecular Insights in Yellow Rust Resistance under Field Conditions Research article (Peer reviewed) DOI:10.3390/agronomy10121888
Kumar, Dhananjay; Kushwaha, Sandeep Kumar; Kushwaha, Sandeep et. al 2020 Affordable phenotyping of winter wheat under field and controlled conditions for drought tolerance Research article (Peer reviewed) DOI:10.3390/agronomy10060882
Maurya, Neha S.; Kushwaha, Sandeep; Mani, Ashutosh 2019 Recent Advances and Computational Approaches in Peptide Drug Discovery Review article (Peer reviewed) DOI:10.2174/1381612825666190911161106
Desta, Zeratsion Abera; Kolano, Bozena; Shamim, Zeeshan et. al 2019 Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes Research article (Peer reviewed) DOI:10.1038/s41598-019-53320-0
Kushwaha, Sandeep Kumar; Grimberg, Asa; Carlsson, Anders S. et. al 2019 Charting oat (Avena sativa) embryo and endosperm transcription factor expression reveals differential expression of potential importance for seed development Research article (Peer reviewed) DOI:10.1007/s00438-019-01571-x
Vetukuri, R. R.; Kalyandurg, P. B.; Sen, D. et. al 2019 The role of viral and oomycete suppressors of silencing in modulating plant defense Conference abstract
Sen, D.; Kushwaha, S.; Lamour, K. H. et. al 2019 New insights into pathogenicity of the emerging tropical pathogen: Phytophthora colocasiae on taro Conference abstract
Kalyandurg, Pruthvi B.; Tahmasebi, Aminallah; Vetukuri, Ramesh R. et. al 2019 Efficient RNA silencing suppression activity of Potato Mop-Top Virus 8K protein is driven by variability and positive selection Research article (Peer reviewed) DOI:10.1016/j.virol.2019.06.018
Vetukuri, Ramesh R.; Tripathy, Sucheta; Malar, Mathu C. et. al 2018 Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora Research article (Peer reviewed) DOI:10.1093/gbe/evy162
Vetukuri, Ramesh R.; Kushwaha, Sandeep K.; Sen, Diya et. al 2018 Genome Sequence Resource for the Oomycete Taro Pathogen Phytophthora colocasiae Research article (Peer reviewed) DOI:10.1094/MPMI-12-17-0321-A
Kushwaha, Sandeep Kumar; Vetukuri, Ramesh; Grenville-Briggs Didymus, Laura 2017 Draft Genome of Biocontrol Agent Pythium periplocum Strain CBS 532.74 Research article DOI:10.1128/genomeA.00057-17
Kushwaha, Sandeep Kumar; Vetukuri, Ramesh; Grenville-Briggs Didymus, Laura 2017 Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74 Research article DOI:10.1128/genomeA.00346-17
Manoharan, Lokeshwaran; Kushwaha, Sandeep K.; Ahren, Dag et. al 2017 Agricultural land use determines functional genetic diversity of soil microbial communities Research article (Peer reviewed) DOI:10.1016/j.soilbio.2017.09.011
Grenville-Briggs Didymus, Laura; Kushwaha, Sandeep Kumar; Cleary, Michelle et. al 2017 Draft Genome of the Oomycete pathogen Phytophthora cactorum Strain LV007 isolated from European Beech (Fagus sylvatica) Research article (Peer reviewed) DOI:10.1016/j.gdata.2017.05.010
Paritosh, Kunwar; Kumar Kushwaha, Sandeep; Yadav, Monika et. al 2017 Food Waste to Energy: An Overview of Sustainable Approaches for Food Waste Management and Nutrient Recycling Review article (Peer reviewed) DOI:10.1155/2017/2370927
Kushwaha, Sandeep K.; Chauhan, Pallavi; Hedlund, Katarina et. al 2016 NBSPred: a support vector machine-based high throughput pipeline for plant resistance protein NBSLRR prediction Research article (Peer reviewed) DOI:10.1093/bioinformatics/btv714
Hofvander, Per; Ischebeck, Till; Turesson, Helle et. al 2016 Potato tuber expression of Arabidopsis WRINKLED1 increase triacylglycerol and membrane lipids while affecting central carbohydrate metabolism Research article (Peer reviewed) DOI:10.1111/pbi.12550
Roy, Amit; Walker, William B.; Vogel, H. et. al 2016 Data set for diet specific differential gene expression analysis in three Spodoptera moths Research article (Peer reviewed) DOI:10.1016/j.dib.2016.04.029
Kushwaha, Sandeep K.; Manoharan, Lokeshwaran; Meerupati, Tejashwari et. al 2015 MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics Research article (Peer reviewed) DOI:10.1186/s12859-015-0501-8
Manoharan, Lokeshwaran; Kumar Kushwaha, Sandeep; Hedlund, Katarina et. al 2015 Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils Research article (Peer reviewed) DOI:10.1093/dnares/dsv026
Rathore, Babita; Kushwaha, Sandeep K.; Shakya, Madhvi et. al 2010 Identification of Melanoma (Skin Cancer) Proteins through Support Vector Machine Conference paper (Peer reviewed) DOI:10.1007/978-3-642-15766-0_97
Kushwaha, Sandeep K.; Shakya, Madhvi 2010 Protein interaction network analysis—approach for potential drug target identification in Mycobacterium tuberculosis Research article (Peer reviewed) DOI:10.1016/j.jtbi.2009.09.029
Kumar Kushwaha, Sandeep; Shakya, Madhvi 2009 Neural Network: A Machine Learning Technique for Tertiary Structure Prediction of Proteins from Peptide Sequences Conference paper (Peer reviewed) DOI:10.1109/ACT.2009.34
Kumar Kushwaha, Sandeep; Shakya, Madhvi 2009 Multi-layer perceptron architecture for tertiary structure prediction of helical content of proteins from peptide sequences Conference paper (Peer reviewed) DOI:10.1109/ARTCom.2009.209
Kumar Kushwaha, Sandeep; Shakya, Madhvi 2009 Molecular modelling and dynamics studies of Mycobacterium tuberculosis protein RelA (Rv2583c) Research article (Peer reviewed)
Kumar Kushwaha, Sandeep 2009 Development of Efficient Drug Analogs for Dutasteride through Insilico Modeling Research article (Peer reviewed)
Kumar Kushwaha, Sandeep; Shakya, Madhvi 2009 PINAT1.0: protein interaction network analysis tool Research article (Peer reviewed)
Kumar Kushwaha, Sandeep; Chauhan, Pallavi 2009 Rational drug designing for drug target alanine racemase (Alr) of mycobacterium tuberculosis Research article (Peer reviewed)