Forskningsartikel2016Vetenskapligt granskad
Genetic analysis of a Treponema phagedenis locus encoding antigenic lipoproteins with potential for antigenic variation
Mushtaq, Mamoona; Loftsdottir, Heidur; Bongcam-Rudloff, Erik et al.
Erik Bongcam Rudloff
Institutionen för husdjurens biovetenskaper
Fakulteten för veterinärmedicin och husdjursvetenskap
E-post: Erik.Bongcam@slu.se
Publikationer
2016
Forskningsartikel2016Vetenskapligt granskadÖppen tillgång
Genomic comparison of Escherichia coli serotype O103:H2 isolates with and without verotoxin genes: implications for risk assessment of strains commonly found in ruminant reservoirs
Söderlund, Robert; Hurel, Julie; Jinnerot, Tomas et al.
Översiktsartikel2016Vetenskapligt granskadÖppen tillgång
Recommendations on e-Infrastructures for next-generation sequencing
Spjuth, Ola; Bongcam-Rudloff, Erik; Dahlberg, Johan et al.
2015
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence
Norling, Martin; Bongcam-Rudloff, Erik; Silva, Joana C..
Övrig publikation2015Vetenskapligt granskadÖppen tillgång
Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
Bongcam-Rudloff, Erik.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
Attwood, Teresa K.; Bongcam-Rudloff, Erik; Zanzoni, Andreas.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
Dahlö, Martin; Haziza, Frédéric; Kallio, Aleksi et al.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
Zubair, Saima; Fischer, Anne; Liljander, Anne et al.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
Draft genome sequence of 'Treponema phagedenis' strain V1, isolated from bovine digital dermatitis
Mushtaq, Mamoona; Manzoor, Shahid; Pringle, Märit et al.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
Manzoor, Shahid; Müller, Bettina; Niazi, Adnan et al.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics
Mushtaq, Mamoona; Zubair, Saima; Råsbäck, Therese et al.
Översiktsartikel2015Vetenskapligt granskadÖppen tillgång
Experiences with workflows for automating data-intensive bioinformatics
Spjuth, Ola; Bongcam-Rudloff, Erik; Vassilev, Dimitar.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
Genome-Guided Analysis of Physiological Capacities of Tepidanaerobacter acetatoxydans Provides Insights into Environmental Adaptations and Syntrophic Acetate Oxidation
Müller, Bettina; Manzoor, Shahid; Niazi, Adnan et al.
Forskningsartikel2015Vetenskapligt granskadÖppen tillgång
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers
Corpas, Manuel; Bongcam-Rudloff, Erik; Attwood, Teresa K..
2014
Forskningsartikel2014Vetenskapligt granskadÖppen tillgång
Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033
Bongcam-Rudloff, Erik; Niazi, Adnan; Manzoor, Shahid et al.
Forskningsartikel2014Vetenskapligt granskadÖppen tillgång
Genome Analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: A Rhizobacterium That Improves Plant Growth and Stress Management
Niazi, Adnan; Manzoor, Shahid; Shashidar, Asari et al.
Kapitel i rapport 2014
Capacity building and bioinformatics challenges
Bongcam-Rudloff, Erik.
Annat bidrag i vetenskaplig tidskrift2014Öppen tillgång
2014 Annual General Meeting – Executive Board Report
Attwood, Teresa K.; Gisel, Andreas; de Villiers, Etienne et al.
Forskningsartikel2014Öppen tillgång
eBioKit bioinformatics workshops in Dar es Salaam, Tanzania
de Villiers, E.P.; Bongcam-Rudloff, Erik.
Forskningsartikel2014Vetenskapligt granskadÖppen tillgång
Molecular Typing of Escherichia coli O157:H7 Isolates from Swedish Cattle and Human Cases: Population Dynamics and Virulence
Söderlund, Robert; Jernberg, C.; Ivarsson, S. et al.
Forskningsartikel2014Vetenskapligt granskad
Studies of plant colonisation by closely related Bacillus amyloliquefaciens biocontrol agents using strain specific quantitative PCR assays
Johansson, Anna H; Bejai, Sarosh; Niazi, Adnan et al.
Forskningsartikel2014Vetenskapligt granskadÖppen tillgång
Relationship between genome and epigenome - challenges and requirements for future research
Almouzni, Genevieve; Altucci, Lucia; Amati, Bruno et al.
Övrig publikation2014Vetenskapligt granskadÖppen tillgång
Data integration in the era of omics: current and future challenges
Gomez-Cabrero, David; Abugessaisa, Imad; Maier, Dieter et al.
Forskningsartikel2014Vetenskapligt granskadÖppen tillgång
Silencing Motifs in the Clr2 Protein from Fission Yeast, Schizosaccharomyces pombe
Steinhauf, Daniel; Rodriguez, Alejandro; Vlachakis, Dimitrios et al.
Översiktsartikel2014Vetenskapligt granskadÖppen tillgång
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information
Masseroli, Marco; Mons, Barend; Bongcam-Rudloff, Erik et al.
2013
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Camel Streptococcus agalactiae populations are associated with specific disease complexes and acquired the tetracycline resistance gene tetM via a Tn916-like element
Fischer, Anne; Liljander, Anne; Heike, Kaspar et al.
Övrig publikation2013Öppen tillgång
The next NGS Challenge Conference: Data processing and integration
Bongcam-Rudloff, Erik; Attwood, Teresa K.; Conesa, Ana et al.
Övrig publikation2013Öppen tillgång
Viral Metagenomics – New applications for the broad-range detection of viromes in veterinary and public health settings
Karlsson, Oskar; Karlsson, Oskar Erik; Norling, Martin et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Best practices in bioinformatics training for life scientists
Via, Allegra; Blicher, Thomas; Bongcam-Rudloff, Erik et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)
Sperber, Göran O.; Bongcam-Rudloff, Erik; Andersson, Göran et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
First genome sequence of a syntrophic acetate-oxidizing bacterium, Tepidanaerobacter acetatoxydans strain re1
Manzoor, Shahid; Bongcam-Rudloff, Erik; Schnürer, Anna et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Genome sequence of Streptococcus agalactiae strain 09mas018883, isolated from a Swedish cow
Zubair, Saima; de Villiers, E.P.; Fuxelius, Hans-Henrik et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Genome sequence of two pathogenic Streptococcus agalactiae isolates from the one-humped camel Camelus dromedarius
Zubair, Saima; de Villiers, E.P.; Younan, Mario et al.
Övrig publikation2013
Next NGS Challenge – Data Processing and Integration’ Conference – Conference report
Conesa, Ana; Bongcam-Rudloff, Erik.
Övrig publikation2013
2013 Annual General Meeting: Executive Board Report
Attwood, Teresa K.; Gisel, Andreas; de Villiers, Etienne et al.
Forskningsartikel2013Vetenskapligt granskad
Workshop on laboratory protocol standards for the molecular methods database
Klingstrom, Tomas; Soldatova, Larissa; Stevens, Robert et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036
Manzoor, Shahid; Niazi, Adnan; Bejai, Sarosh et al.
Forskningsartikel2013Vetenskapligt granskadÖppen tillgång
Draft Genome Sequence of Clostridium ultunense Strain Esp, a Syntrophic Acetate-Oxidizing Bacterium
Manzoor, Shahid; Müller, Bettina; Niazi, Adnan et al.
Övrig publikation2013
Metagenomics sample preparation and sequencing
Karlsson, Oskar; Norling, Martin; Bongcam-Rudloff, Erik.
Övrig publikation2013
The bioinformatics of viral metagenomics
Norling, Martin; Karlsson, Oskar Erik; Bongcam-Rudloff, Erik.
Forskningsartikel2013
Ion Torrent sequencing and pipeline assembly of the first genome sequence of a mesophilic syntrophic acetate oxidizing bacterium (SAOB)
Manzoor, Shahid; Bongcam-Rudloff, Erik; Schnürer, Anna et al.
Forskningsartikel2013Öppen tillgång
Genome sequence of plant associated rhizobacterium Bacillus amyloliquefaciens strain UCMB5033
Niazi, Adnan; Manzoor, Shahid; Bejai, Sarosh et al.
Konferensartikel2013
Rapid whole genome sequencing investigation of a familial outbreak of E. coli 0121:H19 with a sheep farm as the suspected source
Söderlund, Robert; Jernberg, Cecilia; Källman, Christine et al.
Konferensabstrakt2013
Biobanking in emerging countries, a special issue on challenges and opportunities
Klingström, Tomas; Vaught, Jim; Bongcam-Rudloff, Erik.
2012
Övrig publikation2012
Evaluation of selective sweeps for Brachycephaly in dogs and associated susceptibility loci for glioma
Truvé, Katarina; Dickinson, Peter; York, Dan et al.
Editorial2012Vetenskapligt granskad
COST Action BM 1006 (SeqAhead): MC BUSINESS MEETING AND SCIENTIFIC MEETING
Gisel, Andreas; Attwood, Teresa K.; van Helden, Jacques et al.
Övrig publikation2012
Integration and analysis of multi-type high-throughput data for biomolecular knowledge discovery
Bongcam-Rudloff, Erik.
Övrig publikation2012
EMBnet at ISCB Latin America 2012 Conference on Bioinformatics
Gisel, Andreas; Valverde, Jose Ramon; Bongcam-Rudloff, Erik.
Forskningsartikel2012Vetenskapligt granskadÖppen tillgång
The origin of the ‘Mycoplasma mycoides cluster’coincides with domestication of ruminants
Fischer, Anne; Shapiro, Beth; Muriuki, Cecilia et al.
Forskningsartikel2012Vetenskapligt granskadÖppen tillgång
Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development
Wang, Biao; Ekblom, Robert; Castoe, Todd A. et al.