Review article2024Peer reviewed
Use of in silico approaches, synthesis and profiling of Pan-filovirus GP-1,2 preprotein specific antibodies
Wisniewski, Maciej; Babirye, Peace; Musubika, Carol et al.
Erik Bongcam Rudloff
Department of Animal Biosciences
Faculty of Veterinary Medicine and Animal Sciences
Email: Erik.Bongcam@slu.se
Publications
2024
Research article2024Peer reviewedOpen access
Fingerprinting Breast Milk; insights into Milk Exosomics
Papakonstantinou, Eleni; Dragoumani, Konstantina; Mataragka, Antonia.
Research article2024Peer reviewedOpen access
Prevalence of Salmonella spp. in meat, seafood, and leafy green vegetables from local markets and vegetable farms in Phnom Penh, Cambodia
Huoy, Laingshun; Vuth, Sireyvathanak; Hoeng, Sophanith et al.
Research article2024Peer reviewedOpen access
SNP and Structural Study of the Notch Superfamily Provides Insights and Novel Pharmacological Targets against the CADASIL Syndrome and Neurodegenerative Diseases
Papageorgiou, Louis; Papa, Lefteria; Papakonstantinou, Eleni et al.
Research article2024Peer reviewedOpen access
Whole Genome Scan Uncovers Candidate Genes Related to Milk Production Traits in Barka Cattle
Ayalew, Wondossen; Wu, Xiaoyun; Tarekegn, Getinet Mekuriaw et al.
Research article2024Peer reviewedOpen access
Role of Csdc2 in Regulating Secondary Hair Follicle Growth in Cashmere Goats
Zhu, Heqing; Li, Yingying; Xu, He et al.
Research article2024Peer reviewedOpen access
Enrichment of Cis-Acting Regulatory Elements in Differentially Methylated Regions Following Lipopolysaccharide Treatment of Bovine Endometrial Epithelial Cells
Jhamat, Naveed; Guo, Yongzhi; Han, Jilong et al.
2023
Research article2023Peer reviewedOpen access
Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta)
Landi, Michael; Shah, Trushar; Falquet, Laurent et al.
Other publication in scientific journal2023Open access
EpiCass And CassavaNet4Dev Advanced Bioinformatics Workshop
Gisel, Andreas; Stavolone, Livia; Olagunju, Temitayo et al.
Review article2023Peer reviewedOpen access
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
D'Elia, Domenica; Truu, Jaak; Lahti, Leo et al.
Research article2023Peer reviewedOpen access
Whole-Genome Resequencing Reveals Selection Signatures of Abigar Cattle for Local Adaptation
Ayalew, Wondossen; Wu, Xiaoyun; Tarekegn, Getinet Mekuriaw et al.
2022
Conference paper2022Peer reviewed
Ebola virus disease and current therapeutic strategies: a review
Diakou, Kalliopi Io; Mitsis, Thanasis; Pierouli, Katerina et al.
Research article2022Peer reviewedOpen access
Cassava Brown Streak Viruses express second 6-kilodalton (6K2) protein with varied polarity and three dimensional (3D) structures: Basis for trait discrepancy between the virus species
Mero, Herieth; Lyantagaye, Sylvester Leonard; Bongcam Rudloff, Erik.
Research article2022Peer reviewedOpen access
Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species
De Panis, D.; Dopazo, H.; Bongcam-Rudloff, E. et al.
Research article2022Peer reviewedOpen access
Gene Networks and Pathways Involved in LPS-Induced Proliferative Response of Bovine Endometrial Epithelial Cells
Najafi, Mojtaba; Guo, Yongzhi; Andersson, Goran et al.
Research article2022Peer reviewedOpen access
Comparison of common adverse neonatal outcomes among preterm and term infants at the National Referral Hospital in Tanzania: a case-control study
Rugumisa, B.T.; Sangeda, R.Z.; Bongcam-Rudloff, E. et al.
2021
Review article2021Peer reviewed
Why has permanent control of cassava brown streak disease in Sub-Saharan Africa remained a dream since the 1930s?
Mero, Herieth Rhodes; Lyantagaye, Sylvester Leonard; Bongcam-Rudloff, Erik.
Research article2021Peer reviewedOpen access
Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean
Wambua, Sammy; Gourle, Hadrien; de Villiers, Etienne P. et al.
Research article2021Peer reviewed
Factors associated with risk of preterm delivery in Tanzania: A case-control study at Muhimbili National Hospital
Rugumisa, Bernadether T.; Bongcam-Rudloff, Erik; Lukumay, Murate S. et al.
Research article2021Peer reviewedOpen access
The heart microbiome of insectivorous bats from Central and South Eastern Europe
Corduneanu, Alexandra; Mihalca, Andrei Daniel; Sandor, Attila D. et al.
Research article2021Peer reviewedOpen access
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)
Van Damme, Renaud; Hoelzer, Martin; Viehweger, Adrian et al.
2020
Research article2020Peer reviewedOpen access
High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure
Singh, Abhijeet; Nylander, Johan A. A.; Schnurer, Anna et al.
Research article2020Peer reviewedOpen access
The need for standardisation in life science research - an approach to excellence and trust
Hollmann , Susanne; Kremer, Andreas; Baebler, Špela et al.
Research article2020Peer reviewedOpen access
Abundance Tracking by Long-Read Nanopore Sequencing of Complex Microbial Communities in Samples from 20 Different Biogas/Wastewater Plants
Brandt, Christian; Bongcam-Rudloff, Erik; Mueller, Bettina.
Research article2020Peer reviewedOpen access
The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
Senanayake, Kanchana S.; Soderberg, Jonas; Polajev, Aleksei et al.
Research article2020Peer reviewedOpen access
LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function
Jhamat, Naveed; Niazi, Adnan; Guo, Yongzhi et al.
Research article2020Peer reviewedOpen access
Benefits and risks of barefoot harness racing in Standardbred trotters
Sole, Marina; Lindgren, Gabriella; Bongcam-Rudloff, Erik et al.
2019
Research article2019Peer reviewedOpen access
Differential gene expression in bovine endometrial epithelial cells after challenge with LPS; specific implications for genes involved in embryo maternal interactions
Guo, Yongzhi; van Schaik, Tom; Jhamat, Naveed et al.
Conference paper2019Peer reviewed
Changes induced by pathogens and metabolic stress on endometrial function in cattle: possible impacts of increased inflammation on fertility
Guo, Yongzhi; Chankeaw, Wiruntita; Chanrot, Metasu et al.
Research article2019Peer reviewedOpen access
Simulating Illumina metagenomic data with InSilicoSeq
Gourle, Hadrien; Karlsson-Lindsjo, Oskar; Hayer, Juliette et al.
2018
Conference poster2018
A One Health approach to emerging zoonoses and biodiversity conservation in Sri Lanka
Fahlman, Åsa; Sunil-Chandra, N.P.; Perera, Vijitha et al.
Conference paper2018Peer reviewed
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation?
Hollmann, Susanne; Attwood, Teresa K.; Bongcam-Rudloff, Erik et al.
Research article2018Peer reviewedOpen access
The identification and classification of endogenous retroviruses in the horse genome
Batmagnai, E.; Bongcam-Rudloff, Erik; Kent, Matthew Peter et al.
Conference abstract2018
An Interdisciplinary Approach Addressing Ticks and Tick-Borne Diseases of Cattle in Uganda
Malmberg, Maja; Mugisha, Lawrence; Balinandi, Stephen et al.
Conference abstract2018Peer reviewed
An interdisciplinary approach addressing ticks and tick-borne diseases of cattle in Uganda
Malmberg, Maja; Mugisha, Lawrence; Balinandi, Stephen et al.
Research article2018Peer reviewedOpen access
High similarity in the microbiota of cold-water sponges of the Genus Mycale from two different geographical areas
Cardenas, Cesar A.; Gonzalez-Aravena, Marcelo; Font, Alejandro et al.
Research article2018Peer reviewedOpen access
Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria
Manzoor, Shahid; Schnurer, Anna; Bongcam-Rudloff, Erik et al.
Review article2018Peer reviewedOpen access
Legal & ethical compliance when sharing biospecimen
Klingstrom, Tomas; Bongcam-Rudloff, Erik; Reichel, Jane.
2017
Conference abstract2017
Changes in gene expression following exposure of bovine endometrial epithelial cells (BEEC) to escherichia coli LPS; their possible effect on implantation
Guo, Yongzhi; Jhamat, Naveed ; Van Schaik, Tom et al.
Research article2017Open access
2016 EMBnet Annual General Meeting – Executive Board Report
D'Elia, Domenica; Hernandez, Emiliano Barreto; Klucar, Lubos et al.
Research article2017Open access
A stepping-stone to developing bioinformatics in Pakistan
Manzoor, Shahid; Niazi, Adnan; Bongcam-Rudloff, Erik.
Research article2017Peer reviewedOpen access
Dynamics of insertion sequence element IS629 inactivation of verotoxin 2 genes in Escherichia coli O157:H7
Loftsdottir, Heiour; Soderlund, Robert; Jinnerot, Tomas et al.
Research article2017Peer reviewedOpen access
Galaksio, a user friendly workflow-centric front end for Galaxy
Klingström, Tomas; Hernandez De Diego, Rafael; Collard, Theo et al.
Research article2017Peer reviewedOpen access
The eBioKit, a stand-alone educational platform for bioinformatics
Hernandez-de-Diego, R; de, Villiers EP; Klingstrom, T et al.
2016
Conference abstract2016
Identification of Differentially Methylated Regions (DMR) in the genome of bovine endometrial epithelial cells (bEEC)challenged by E.Coli LPS and its effect on transcription
Jhamat, Naveed ; Guo, Yongzhi; Niazi, Adnan et al.
Conference paper2016Peer reviewedOpen access
Supporting the Development of Biobanks in Low and Medium Income Countries
Klingström, Tomas; Mendy, Maimuna: Meunier, Dominique; Berger, Anouk et al.
Research article2016Peer reviewedOpen access
Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii
Manzoor, Shahid; Bongcam-Rudloff, Erik; Schnürer, Anna et al.
Research article2016Peer reviewedOpen access
Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus
Truvé, Katarina; Fuxelius, Hans-Henrik; Andersson, Göran et al.
Research article2016Peer reviewedOpen access
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies
Norling, Martin; Karlsson-Lindsjö, Oskar E.; Karlsson Lindsjö, Oskar et al.
Research article2016Peer reviewedOpen access
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)
Manzoor, Shahid; Schnürer, Anna; Bongcam-Rudloff, Erik et al.