EpiCass And CassavaNet4Dev Advanced Bioinformatics Workshop
Other publication in scientific journal
Erik Bongcam Rudloff
Department of Animal Breeding and Genetics
Faculty of Veterinary Medicine and Animal Sciences
Email: Erik.Bongcam@slu.se
Publications
2023
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
Review article (Peer reviewed)
Whole-Genome Resequencing Reveals Selection Signatures of Abigar Cattle for Local Adaptation
Research article (Peer reviewed)
2022
Gene Networks and Pathways Involved in LPS-Induced Proliferative Response of Bovine Endometrial Epithelial Cells
Research article (Peer reviewed)
Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species
Research article (Peer reviewed)
Cassava Brown Streak Viruses express second 6-kilodalton (6K2) protein with varied polarity and three dimensional (3D) structures: Basis for trait discrepancy between the virus species
Research article (Peer reviewed)
Ebola virus disease and current therapeutic strategies: a review
Conference paper (Peer reviewed)
2021
Why has permanent control of cassava brown streak disease in Sub-Saharan Africa remained a dream since the 1930s?
Review article (Peer reviewed)
Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean
Research article (Peer reviewed)
Factors associated with risk of preterm delivery in Tanzania: A case-control study at Muhimbili National Hospital
Research article (Peer reviewed)
The heart microbiome of insectivorous bats from Central and South Eastern Europe
Research article (Peer reviewed)
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)
Research article (Peer reviewed)
2020
High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure
Research article (Peer reviewed)
The need for standardisation in life science research - an approach to excellence and trust
Research article (Peer reviewed)
Abundance Tracking by Long-Read Nanopore Sequencing of Complex Microbial Communities in Samples from 20 Different Biogas/Wastewater Plants
Research article (Peer reviewed)
The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
Research article (Peer reviewed)
LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function
Research article (Peer reviewed)
Benefits and risks of barefoot harness racing in Standardbred trotters
Research article (Peer reviewed)
2019
Differential gene expression in bovine endometrial epithelial cells after challenge with LPS; specific implications for genes involved in embryo maternal interactions
Research article (Peer reviewed)
Changes induced by pathogens and metabolic stress on endometrial function in cattle: possible impacts of increased inflammation on fertility
Conference paper (Peer reviewed)
Simulating Illumina metagenomic data with InSilicoSeq
Research article (Peer reviewed)
2018
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation?
Conference paper (Peer reviewed)
The identification and classification of endogenous retroviruses in the horse genome
Research article (Peer reviewed)
An Interdisciplinary Approach Addressing Ticks and Tick-Borne Diseases of Cattle in Uganda
Conference abstract
A One Health approach to emerging zoonoses and biodiversity conservation in Sri Lanka
Conference poster
An interdisciplinary approach addressing ticks and tick-borne diseases of cattle in Uganda
Conference abstract (Peer reviewed)
High similarity in the microbiota of cold-water sponges of the Genus Mycale from two different geographical areas
Research article (Peer reviewed)
Genome-Guided Analysis of Clostridium ultunense and Comparative Genomics Reveal Different Strategies for Acetate Oxidation and Energy Conservation in Syntrophic Acetate-Oxidising Bacteria
Research article (Peer reviewed)
Legal & ethical compliance when sharing biospecimen
Review article (Peer reviewed)
2017
Changes in gene expression following exposure of bovine endometrial epithelial cells (BEEC) to escherichia coli LPS; their possible effect on implantation
Conference abstract
2016 EMBnet Annual General Meeting – Executive Board Report
Research article
A stepping-stone to developing bioinformatics in Pakistan
Research article
Dynamics of insertion sequence element IS629 inactivation of verotoxin 2 genes in Escherichia coli O157:H7
Research article (Peer reviewed)
Galaksio, a user friendly workflow-centric front end for Galaxy
Research article (Peer reviewed)
The eBioKit, a stand-alone educational platform for bioinformatics
Research article (Peer reviewed)
2016
Identification of Differentially Methylated Regions (DMR) in the genome of bovine endometrial epithelial cells (bEEC)challenged by E.Coli LPS and its effect on transcription
Conference abstract
Supporting the Development of Biobanks in Low and Medium Income Countries
Conference paper (Peer reviewed)
Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii
Research article (Peer reviewed)
Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development-Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus
Research article (Peer reviewed)
MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies
Research article (Peer reviewed)
Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)
Research article (Peer reviewed)
Genetic analysis of a Treponema phagedenis locus encoding antigenic lipoproteins with potential for antigenic variation
Research article (Peer reviewed)
Genomic comparison of Escherichia coli serotype O103:H2 isolates with and without verotoxin genes: implications for risk assessment of strains commonly found in ruminant reservoirs
Research article (Peer reviewed)
Recommendations on e-Infrastructures for next-generation sequencing
Review article (Peer reviewed)
2015
The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence
Research article (Peer reviewed)
Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
Other publication (Peer reviewed)
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
Research article (Peer reviewed)
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
Research article (Peer reviewed)
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel
Research article (Peer reviewed)
Draft genome sequence of 'Treponema phagedenis' strain V1, isolated from bovine digital dermatitis
Research article (Peer reviewed)
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