Research article2024Peer reviewedOpen access
Gene co-expression network analysis reveal core responsive genes in Parascaris univalens tissues following ivermectin exposure
Dube, Faruk; Delhomme, Nicolas; Martin, Frida et al.
Nicolas Delhomme
Department of Forest Genetics and Plant Physiology
Email: nicolas.delhomme@slu.se
ORCID: 0000-0002-3053-0796
Publications
2024
Research article2024Peer reviewedOpen access
A resource of identified and annotated lincRNAs expressed during somatic embryogenesis development in Norway spruce
Canovi, Camilla; Stojkovic, Katja; Benitez, Aaron Ayllon et al.
Research article2024Peer reviewedOpen access
An Improved Chromosome-scale Genome Assembly and Population Genetics resource for Populus tremula
Robinson, Kathryn M.; Schiffthaler, Bastian; Liu, Hui et al.
2023
Research article2023Peer reviewedOpen access
Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain
Dube, Faruk; Hinas, Andrea; Delhomme, Nicolas et al.
Research article2023Peer reviewedOpen access
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature
Lihavainen, Jenna; Simura, Jan; Bag, Pushan et al.
Research article2023Peer reviewedOpen access
Seior: Efficient calculation of robust ensemble gene networks
Schiffthaler, Bastian; van Zalen, Elena; Serrano, Alonso R. et al.
Research article2023Peer reviewedOpen access
SeedTransNet: a directional translational network revealing regulatory patterns during seed maturation and germination
Bai, Bing; Schiffthaler, Bastian; van der Horst, Sjors et al.
Research article2023Peer reviewedOpen access
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development
Urbancsok, Janos; Donev, Evgeniy N.; Sivan, Pramod et al.
2022
Research article2022Peer reviewedOpen access
Transcriptome Analysis of an Aedes albopictus Cell Line Single- and Dual-Infected with Lammi Virus and WNV
Ohlund, Pontus; Delhomme, Nicolas; Hayer, Juliette et al.
Research article2022Peer reviewedOpen access
Metabolic control of arginine and ornithine levels paces the progression of leaf senescence
Liebsch, Daniela; Juvany, Marta; Li, Zhonghai et al.
Research article2022Peer reviewedOpen access
FLOWERING LOCUS T paralogs control the annual growth cycle in Populus trees
Andre, Domenique; Marcon, Alice; Lee, Keh Chien et al.
Research article2022Peer reviewedOpen access
Cone-setting in spruce is regulated by conserved elements of the age-dependent flowering pathway
Akhter, Shirin; Westrin, Karl Johan; Zivi, Nathan et al.
Research article2022Peer reviewedOpen access
Laccaria bicolor pectin methylesterases are involved in ectomycorrhiza development with Populus tremula x Populus tremuloides
Chowdhury, Jamil; Kemppainen, Minna; Delhomme, Nicolas et al.
2021
Research article2021Peer reviewedOpen access
Exploring the beta-tubulin gene family in a benzimidazole-resistant Parascaris univalens population
Martin, Frida; Halvarsson, Peter; Delhomme, Nicolas et al.
Research article2021Peer reviewedOpen access
An atlas of the Norway spruce needle seasonal transcriptome
Bag, Pushan; Lihavainen, Jenna; Delhomme, Nicolas et al.
Research article2021Peer reviewedOpen access
Sex without crossing over in the yeast Saccharomycodes ludwigii
Papaioannou, Ioannis A.; Dutreux, Fabien; Peltier, France A. et al.
Research article2021Peer reviewedOpen access
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)
Christie, Nanette; Mannapperuma, Chanaka; Ployet, Raphael et al.
Research article2021Peer reviewedOpen access
Populus PtERF85 Balances Xylem Cell Expansion and Secondary Cell Wall Formation in Hybrid Aspen
Seyfferth, Carolin; Wessels, Bernard A.; Vahala, Jorma et al.
Research article2021Peer reviewedOpen access
Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture
Mahboubi, Amir; Delhomme, Nicolas; Haggstrom, Sara et al.
Research article2021Peer reviewedOpen access
ProkSeq for complete analysis of RNA-Seq data from prokaryotes
Mahmud, A. K. M. Firoj; Delhomme, Nicolas; Nandi, Soumyadeep et al.
Research article2021Peer reviewedOpen access
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce
Schneider, Andreas N.; Sundh, John; Sundstrom, Gorel et al.
2020
Research article2020Peer reviewedOpen access
The chromatin-modifying protein HUB2 is involved in the regulation of lignin composition in xylem vessels
Zhang, Bo; Sztojka, Bernadette; Seyfferth, Carolin et al.
Research article2020Peer reviewedOpen access
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants
Sullivan, Alexis R.; Eldfjell, Yrin; Schiffthaler, Bastian et al.
2019
Research article2019Peer reviewedOpen access
Ethylene Signaling Is Required for Fully Functional Tension Wood in Hybrid Aspen
Seyfferth, Carolin; Wessels, Bernard A.; Gorzsas, Andras et al.
Research article2019Peer reviewedOpen access
An AP2/ERF transcription factor ERF139 coordinates xylem cell expansion and secondary cell wall deposition
Wessels, Bernard; Seyfferth, Carolin; Escamez, Sacha et al.
Research article2019Peer reviewed
High Spatial Resolution Profiling in Tree Species
Giacomello, Stefania; Delhomme, Nicolas; Niittyla, Totte et al.
Research article2019Peer reviewedOpen access
PECTIN ACETYLESTERASE9 Affects the Transcriptome and Metabolome and Delays Aphid Feeding(1)([OPEN])
Kloth, Karen J.; Abreu, Ilka N.; Delhomme, Nicolas et al.
Research article2019Peer reviewedOpen access
Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce(1)([OPEN])
Blokhina, Olga; Laitinen, Teresa; Hatakeyama, Yuto et al.
Research article2019Peer reviewedOpen access
Global gene expression analysis in etiolated and de-etiolated seedlings in conifers
Ranade, Sonali Sachin; Delhomme, Nicolas; Garcia-Gil, M. Rosario.
Research article2019Peer reviewedOpen access
Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data
Kumar, Vikash; Hainaut, Matthieu; Delhomme, Nicolas et al.
Research article2019Peer reviewedOpen access
Transcriptome analysis of shade avoidance and shade tolerance in conifers
Ranade, Sonali Sachin; Delhomme, Nicolas; Garcia-Gil, Maria Rosario.
2018
Research article2018Peer reviewedOpen access
Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce
Jokipii-Lukkari, Soile; Delhomme, Nicolas; Schiffthaler, Bastian et al.
Research article2018Peer reviewedOpen access
Ethylene-Related Gene Expression Networks in Wood Formation
Seyfferth, Carolin; Wessels, Bernard; Jokipii-Lukkari, Soile et al.
Research article2018Peer reviewedOpen access
The gut microbiome participates in transgenerational inheritance of low-temperature responses in Drosophila melanogaster
Zare, Aman; Johansson, Anna-Mia; Karlsson, Edvin et al.
Research article2018Peer reviewedOpen access
Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death
Reza, Salim H.; Delhomme, Nicolas; Street, Nathaniel R. et al.
Research article2018Peer reviewedOpen access
Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies
Akhter, Shirin; Kretzschmar, Warren W.; Nordal, Veronika et al.
Research article2018Peer reviewedOpen access
A genetic network mediating the control of bud break in hybrid aspen
Singh, Rajesh Kumar; Maurya, Jay P.; Azeez, Abdul et al.
Research article2018Peer reviewed
PORCUPINE regulates development in response to temperature through alternative splicing
Capovilla, Giovanna; Delhomme, Nicolas; Collani, Silvio et al.
Research article2018Peer reviewedOpen access
Darkened Leaves Use Different Metabolic Strategies for Senescence and Survival
Law, Simon R.; Chrobok, Daria; Juvany, Marta et al.
Research article2018Peer reviewedOpen access
Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen
Felten, Judith; Vahala, Jorma; Love, Jonathan et al.
2017
Research article2017Peer reviewedOpen access
A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism
Laitinen, Teresa; Morreel, Kris; Delhomme, Nicolas et al.
Research article2017Peer reviewedOpen access
AspWood: High-spatial-resolution transcriptome profiles reveal uncharacterized modularity of wood formation in Populus tremula
Sundell, David; Street, Nathaniel R.; Kumar, Manoj et al.
2016
Research article2016Peer reviewedOpen access
Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability
Schiffthaler, Bastian; Kostadima, Myrto; Delhomme, Nicolas et al.
2015
Research article2015Peer reviewedOpen access
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
Delhomme, Nicolas; Sundström, Görel; Lantz, Henrik et al.
Research article2015Peer reviewedOpen access
The Plant Genome Integrative Explorer Resource: PlantGenIE.org
Sundell, David; Mannapperuma, Chanaka; Netotea, Sergiu et al.
2014
Research article2014Peer reviewedOpen access
Populus tremula (European aspen) shows no evidence of sexual dimorphism
Robinson, Kathryn M.; Delhomme, Nicolas; Mahler, Niklas et al.
2013
Research article2013Peer reviewedOpen access
The Genomic and Transcriptomic Landscape of a HeLa Cell Line
Landry, Jonathan J. M.; Pyl, Paul Theodor; Rausch, Tobias et al.
Research article2013Peer reviewedOpen access
The Norway spruce genome sequence and conifer genome evolution
Nystedt, Bjorn; Street, Nathaniel R.; Wetterbom, Anna et al.
2012
Research article2012Peer reviewedOpen access
Nos2 Inactivation Promotes the Development of Medulloblastoma in Ptch1+/− Mice by Deregulation of Gap43–Dependent Granule Cell Precursor Migration
Haag, Daniel; Zipper, Petra; Westrich, Viola et al.
Research article2012Peer reviewedOpen access
easyRNASeq: a bioconductor package for processing RNA-Seq data
Delhomme, Nicolas; Padioleau, Ismael; Furlong, Eileen E. et al.