Johansson, Jan
- Department of Animal Biosciences, Swedish University of Agricultural Sciences
Abstract
The study of protein structure and function has evolved to become a leading discipline in the biophysical sciences. Although it is not yet possible to determine 3D protein structures from MS data alone, multiple MS-based techniques can be combined to obtain structural and functional data that are complementary to classical protein structure information obtained from NMR or X-ray crystallography. Monitoring gas-phase interactions of non-covalent complexes yields information on binding constants, complex stability, and the nature of interactions. Ion mobility MS and chemical crosslinking strategies can be applied to probe the architecture of macromolecular assemblies and protein-ligand complexes. MS analysis of hydrogen-deuterium exchange can be used to determine the localization of secondary structure elements, binding sites and conformational dynamics of proteins in solution. This minireview focuses first on new strategies that combine these techniques to gain insights into protein structure and function. Using one such strategy, we then demonstrate how a novel hydrogen-deuterium exchange microfluidics tool can be used online with an ESI mass spectrometer to monitor regional accessibility in a peptide, as exemplified with amyloid-beta peptide 1-40.
Keywords
deuterium exchange; ESI-MS; gas-phase interaction; ion mobility; protein structure
Published in
FEBS Journal
2011, volume: 278, number: 20, pages: 3815-3821
Publisher: WILEY-BLACKWELL
SLU Authors
UKÄ Subject classification
Biochemistry
Molecular Biology
Publication identifier
- DOI: https://doi.org/10.1111/j.1742-4658.2011.08215.x
Permanent link to this page (URI)
https://res.slu.se/id/publ/46263