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Research article - Peer-reviewed, 2022

Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species

Tian, Yang; Liu, Shu-Yu; Ingvarsson, Par K.; Zhao, Dan-Dan; Wang, Li; Abuduhamiti, Baoerjiang; Cai, Jin-Feng; Wu, Zhi-Qiang; Zhang, Jian-Guo; Wang, Zhao-Shan

Abstract

Identifying the factors that cause reproductive isolation and their relative importance in species divergence is crucial to our understanding of speciation processes. In most species, natural selection is commonly considered to play a large role in driving speciation. Based on whole genome re-sequencing data from 27 Populus alba and 28 Populus adenopoda individuals, we explored the factors related to reproductive isolation of these two closely related species. The results showed that the two species diverged similar to 5-10 million years ago (Ma), when the Qinghai-Tibet Plateau reached a certain height and the inland climate of the Asian continent became arid. In highly differentiated genomic regions, the relative divergence (F-ST) and absolute divergence (d(xy)) were significantly higher than the genomic background, theta pi and shared polymorphisms decreased whereas fixed differences increased, which indicated that natural selection played a key role in the reproductive isolation of the two species. In addition, we found several genes that were related to reproduction that may be involved in explaining the reproductive isolation. Using phylogenetic trees resolved from haplotype data of Populus tomentosa and P. adenopoda, the maternal origin of P. tomentosa from P. adenopoda was likely to be located in Hubei and Chongqing Provinces.

Keywords

demographic histories; natural selection; P. adenopoda; P. tomentosa; P. alba; whole genome re-sequencing

Published in

Journal of Systematics and Evolution
2022,
Publisher: WILEY

Authors' information

Tian, Yang
Chinese Academy of Forestry
Tian, Yang
Nanjing Forestry University
Liu, Shu-Yu
Chinese Academy of Forestry
Swedish University of Agricultural Sciences, Department of Plant Biology
Zhao, Dan-Dan
Chinese Academy of Forestry
Wang, Li
Chinese Academy of Forestry
Abuduhamiti, Baoerjiang
Forestry Res Inst Altay Reg
Cai, Jin-Feng
Nanjing Forestry University
Wu, Zhi-Qiang
Agriculture Genomes Institute at Shenzhen, CAAS
Zhang, Jian-Guo
Chinese Academy of Forestry
Zhang, Jian-Guo
Nanjing Forestry University
Wang, Zhao-Shan
Chinese Academy of Forestry
Wang, Zhao-Shan
Nanjing Forestry University

UKÄ Subject classification

Biological Systematics
Evolutionary Biology

Publication Identifiers

DOI: https://doi.org/10.1111/jse.12911

URI (permanent link to this page)

https://res.slu.se/id/publ/119927