Haplotype blocks and heterozygosity rich regions on ECA2 in Swedish Warmblood horses

Abstract

The Fragile Foal Syndrome (FFS) is a disease caused by a recessive lethal missense mutation in the PLOD1 gene (ECA2). Despite its harmful effect, a relatively high frequency of the FFS allele carriers has been found in the Swedish Warmblood (SWB), suggesting a heterozygous advantage. Balancing selection can be further studied in haplotype blocks and increased heterozygosity around the target of selection. In this study we evaluated the presence of haplotype blocks and Runs of Heterozygosity on ECA2 in 380 SWB horses divided by sport discipline. In horses mainly bred for dressage a haplotype block comprising the FFS variant was found. On average 11.7 Runs of Heterozygosity were identified per horse on ECA2, with no significant difference in numbers between the sport disciplines. This study provides a preliminary characterization of haplotype blocks and heterozygosity rich regions on ECA2 which may further corroborate the potential presence of balancing selection for the FFS allele.

Title: Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges
eISBN: 978-90-8686-940-4
Publisher: Wageningen Academic Publishers

Conference

12th World Congress on Genetics Applied to Livestock Production (WCGALP), 3-8 July, Netherlands

SLU Authors

• Mikko, Sofia

  • Department of Animal Biosciences, Swedish University of Agricultural Sciences
    

UKÄ Subject classification

Genetics and Breeding


Publication identifier

DOI: https://doi.org/10.3920/978-90-8686-940-4_767

Permanent link to this page (URI)

https://res.slu.se/id/publ/121496