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Research article2023Peer reviewedOpen access

Genes with epigenetic alterations in human pancreatic islets impact mitochondrial function, insulin secretion, and type 2 diabetes

Ronn, Tina; Ofori, Jones K.; Perfilyev, Alexander; Hamilton, Alexander; Pircs, Karolina; Eichelmann, Fabian; Garcia-Calzon, Sonia; Karagiannopoulos, Alexandros; Stenlund, Hans; Wendt, Anna; Volkov, Petr; Schulze, Matthias B.; Mulder, Hindrik; Eliasson, Lena; Ruhrmann, Sabrina; Bacos, Karl; Ling, Charlotte

Abstract

Epigenetic dysregulation may influence disease progression. Here we explore whether epigenetic alterations in human pancreatic islets impact insulin secretion and type 2 diabetes (T2D). In islets, 5,584 DNA methylation sites exhibit alterations in T2D cases versus controls and are associated with HbA1c in individuals not diagnosed with T2D. T2D-associated methylation changes are found in enhancers and regions bound by beta-cell-specific transcription factors and associated with reduced expression of e.g. CABLES1, FOXP1, GABRA2, GLR1A, RHOT1, and TBC1D4. We find RHOT1 (MIRO1) to be a key regulator of insulin secretion in human islets. Rhot1-deficiency in beta-cells leads to reduced insulin secretion, ATP/ADP ratio, mitochondrial mass, Ca2+, and respiration. Regulators of mitochondrial dynamics and metabolites, including L-proline, glycine, GABA, and carnitines, are altered in Rhot1-deficient beta-cells. Islets from diabetic GK rats present Rhot1-deficiency. Finally, RHOT1methylation in blood is associated with future T2D. Together, individuals with T2D exhibit epigenetic alterations linked to mitochondrial dysfunction in pancreatic islets.Type 2 diabetes (T2D) is characterized by hyperglycemia caused by insufficient insulin release from pancreatic islets, often in combination with insulin resistance. Here the authors present an epigenetic case-control study in human pancreatic islets revealing changes that contribute to type 2 diabetes development, e.g., epigenetic downregulation of RHOT1.

Published in

Nature Communications
2023, Volume: 14, number: 1, article number: 8040
Publisher: NATURE PORTFOLIO

    UKÄ Subject classification

    Cell and Molecular Biology
    Endocrinology and Diabetes

    Publication identifier

    DOI: https://doi.org/10.1038/s41467-023-43719-9

    Permanent link to this page (URI)

    https://res.slu.se/id/publ/127850