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Research article2012Peer reviewed

pH-Dependent Dimerization of Spider Silk N-Terminal Domain Requires Relocation of a Wedged Tryptophan Side Chain

Jaudzems, Kristaps; Askarieh, Glareh; Landreh, Michael; Nordling, Kerstin; Hedhammar, My; Jörnvall, Hans; Rising, Anna; Knight, Stefan David; Johansson, Jan


Formation of spider silk from its constituent proteins-spidroins-involves changes from soluble helical/coil conformations to insoluble beta-sheet aggregates. This conversion needs to be regulated to avoid precocious aggregation proximally in the silk gland while still allowing rapid silk assembly in the distal parts. Lowering of pH from about 7 to 6 is apparently important for silk formation. The spidroin N-terminal domain (NT) undergoes stable dimerization and structural changes in this pH region, but the underlying mechanisms are incompletely understood. Here, we determine the NMR and crystal structures of Euprosthenops australis NT mutated in the dimer interface (A72R). Also, the NMR structure of wild-type (wt) E. australis NT at pH 7.2 and 300 mM sodium chloride was determined. The wt NT and A72R structures are monomers and virtually identical, but they differ from the subunit structure of dimeric wt NT mainly by having a tryptophan (W10) buried between helix 1 and helix 3, while W10 is surface exposed in the dimer. Wedging of the W10 side chain in monomeric NT tilts helix 3 approximately 5-6 angstrom into a position that is incompatible with that of the observed dimer structure. The structural differences between monomeric and dimeric NT domains explain the tryptophan fluorescence patterns of NT at pH 7 and pH 6 and indicate that the biological function of NT depends on conversion between the two conformations. (C) 2012 Elsevier Ltd. All rights reserved.


NMR structure; X-ray structure; protein assembly; spidroin

Published in

Journal of Molecular Biology
2012, Volume: 422, number: 4, pages: 477-487

      SLU Authors

    • Askarieh, Glareh

      • Department of Molecular Biology, Swedish University of Agricultural Sciences
          • Knight, Stefan David

            • Department of Molecular Biology, Swedish University of Agricultural Sciences
          • UKÄ Subject classification

            Structural Biology

            Publication identifier


            Permanent link to this page (URI)