Skip to main content
SLU publication database (SLUpub)
Research article - Peer-reviewed, 2012

Investigation of fungal development in maize kernels using NIR hyperspectral imaging and multivariate data analysis

Williams, Paul J; Geladi, Paul; Britz, Trevor J.; Manley, Marena


Near infrared (NIR) hyperspectral imaging and hyperspectral image analysis were evaluated for their potential to track changes in fungal contamination on and fungal activity immediately under the surface of whole maize kernels (Zen mays L) infected with Fusarium verticillioides. Hyperspectral images of clean and infected kernels were acquired using a SisuChema hyperspectral pushbroom imaging system with a spectral range of 1000-2498 nm at predetermined time intervals after infection. Background, bad pixels and shading of acquired absorbance images were removed using exploratory principal component analysis (PCA). When plotting PC4 against PC5, with percentage sum of squares (%SS) 0.49% and 0.34%, three distinct clusters were apparent in the score plot and this was associated with degree of infection. Loading line plots, with prominent peaks at 1900 nm and 2136 nm, confirmed that the source of variation was due to changes in starch and protein. Partial least squares (PLS) regression models, with time as the Y variable, were calculated and also indicated that changes, over time were apparent. Variable importance plots (VIP) confirmed the peaks observed in the PCA loading line plots. More systematic future experiments are needed to confirm this, but it can already be concluded that early detection of fungal contamination and activity is possible. (C) 2012 Elsevier Ltd. All rights reserved.


NIR hyperspectral imaging; Fusarium verticillioides; Principal component analysis (PCA); Partial least squares (PLS)

Published in

Journal of Cereal Science
2012, Volume: 55, number: 3, pages: 272-278