Research article - Peer-reviewed, 2015
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
Manzoor, Shahid; Müller, Bettina; Niazi, Adnan; Schnürer, Anna; Bongcam-Rudloff, ErikAbstract
Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3.Keywords
Syntrophic acetate oxidizing bacteria; Acetogens; Syntrophy; Methanogens; Hydrogen producer; Methane productionPublished in
Standards in Genomic Sciences2015, volume: 10, article number: 99
Publisher: BIOMED CENTRAL LTD
Authors' information
Manzoor, Shahid
Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics
Manzoor, Shahid
University of the Punjab
Swedish University of Agricultural Sciences, Department of Microbiology
Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics
Swedish University of Agricultural Sciences, Department of Microbiology
Bongcam-Rudloff, Erik (Bongcam Rudloff, Erik)
Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics
UKÄ Subject classification
Genetics and Breeding
Microbiology
Publication Identifiers
DOI: https://doi.org/10.1186/s40793-015-0092-z
URI (permanent link to this page)
https://res.slu.se/id/publ/72289