Strategies and Protocols for Optimized Genome Editing in Potato

Sammanfattning

The potato family includes a highly diverse cultivar repertoire and has a high potential for nutritional yield improvement and refinement but must in line with other crops be adapted to biotic and abiotic stresses, for example, accelerated by climate change and environmental demands. The combination of pluripotency, high ploidy, and relative ease of protoplast isolation, transformation, and regeneration together with clonal propagation through tubers makes potato highly suitable for precise genetic engineering. Most potato varieties are tetraploid having a very high prevalence of length polymorphisms and small nucleotide polymorphisms between alleles, often complicating CRISPR-Cas editing designs and strategies. CRISPR-Cas editing in potato can be divided into (i) characterization of target area and in silico-aided editing design, (ii) isolation and editing of protoplast cells, and (iii) the subsequent explant regeneration from single protoplast cells. Implementation of efficient CRISPR-Cas editing relies on efficient editing at the protoplast (cell pool) level and on robust high-throughput editing scoring methods at the cell pool and explant level. Gene and chromatin structure are additional features to optionally consider. Strategies and solutions for addressing key steps in genome editing of potato, including light conditions and schemes for reduced exposure to hormones during explant regeneration, which is often linked to somaclonal variation, are highlighted.

Nyckelord

CRISPR-Cas plant breeding, plant regeneration, protoplast transformation, complex high ploidy genome, small nucleotide and length polymorphism, Indel Detection Amplicon Analysis

Publicerad i

The CRISPR journal
2024
Utgivare: MARY ANN LIEBERT, INC

SLU författare

• Andreasson, Erik

  • Institutionen för växtskyddsbiologi, Sveriges lantbruksuniversitet
    

UKÄ forskningsämne

Genetik och förädling

Publikationens identifierare

• DOI: https://doi.org/10.1089/crispr.2024.0068

Permanent länk till denna sida (URI)

https://res.slu.se/id/publ/139584