MASQOT-GUI: spot quality assessment for the two-channel microarray platform

Abstract

MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts a set of independent applications, with interactions between the tools as well as import and export support for external software. The implementation of automated multivariate quality control assessment, which is a unique feature of MASQOT-GUI, is based on the previously documented and evaluated MASQOT methodology. Further abilities of the application are outlined and illustrated

Published in

Bioinformatics
2006, volume: 22, number: 20, pages: 2554-2555
Publisher: OXFORD UNIV PRESS

SLU Authors

• Hoffman, Daniel

  • Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences
    

• Moritz, Thomas

  • Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences
    

UKÄ Subject classification

Forest Science

Publication identifier

• DOI: https://doi.org/10.1093/bioinformatics/btl434

Permanent link to this page (URI)

https://res.slu.se/id/publ/10257