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Research article - Peer-reviewed, 2006

MASQOT-GUI: spot quality assessment for the two-channel microarray platform

Bylesjo M, Sjodin A, Eriksson D, Antti H, Moritz T, Jansson S, Trygg J

Abstract

MASQOT-GUI provides an open-source, platform-independent software pipeline for two-channel microarray spot quality control. This includes gridding, segmentation, quantification, quality assessment and data visualization. It hosts a set of independent applications, with interactions between the tools as well as import and export support for external software. The implementation of automated multivariate quality control assessment, which is a unique feature of MASQOT-GUI, is based on the previously documented and evaluated MASQOT methodology. Further abilities of the application are outlined and illustrated

Published in

Bioinformatics
2006, volume: 22, number: 20, pages: 2554-2555
Publisher: OXFORD UNIV PRESS

Authors' information

Eriksson, Daniel (Eriksson, Daniel)
Swedish University of Agricultural Sciences, Department of Forest Genetics and Plant Physiology
Swedish University of Agricultural Sciences, Department of Forest Genetics and Plant Physiology
Bylesjo, M
Jansson, S
Sjodin, A
Antti, H
Trygg, J

UKÄ Subject classification

Forest Science

Publication Identifiers

DOI: https://doi.org/10.1093/bioinformatics/btl434

URI (permanent link to this page)

https://res.slu.se/id/publ/10257