Ortiz Rios, Rodomiro Octavio
- Department of Plant Breeding, Swedish University of Agricultural Sciences
Abstract
Characterization of major resistance (R) genes to late blight (LB) -caused by the oomycete Phytophthora infestans- is very important for potato breeding. The objective of this study was to identify novel genes for resistance to LB from diploid Solanum tuberosum L. Andigenum Group (StAG) cultivar accessions. Using comparative analysis with a edgeR bioconductor package for differential expression analysis of transcriptomes, two of these accessions with contrasting levels of resistance to LB were analyzed using digital gene expression data. As a result, various differentially expressed genes (P = 0.0001, Log(2)FC = 2, FDR < 0.001) were noted. The combination of transcriptomic analysis provided 303 candidate genes that are overexpressed and underexpressed, thereby giving high resistance to LB. The functional analysis showed differential expression of R genes and their corresponding proteins related to disease resistance, NBS-LRR domain proteins, and specific disease resistance proteins. Comparative analysis of specific tissue transcriptomes in resistant and susceptible genotypes can be used for rapidly identifying candidate R genes, thus adding novel genes from diploid StAG cultivar accessions for host plant resistance to P. infestans in potato.
Keywords
gene expression; genome; host plant resistance; Phytophthora infestans; Solanum tuberosum
Published in
Frontiers in Plant Science
2023, volume: 14, article number: 1210046
SLU Authors
Associated SLU-program
SLU Plant Protection Network
UKÄ Subject classification
Horticulture
Genetics and Breeding in Agricultural Sciences
Agricultural Science
Publication identifier
- DOI: https://doi.org/10.3389/fpls.2023.1210046
Permanent link to this page (URI)
https://res.slu.se/id/publ/123937